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Translational Immunology

TRANSLATIONAL AUTOIMMUNITY, VOL. 3

Translational Immunology TRANSLATIONAL AUTOIMMUNITY, VOL. 3

Autoimmune Disease Associated with Different Clinical Features

Edited by

Nima Rezaei

Professor, Department of Immunology, School of Medicine; Head, Research Center for Immunodeficiencies, Children’s Medical Center, Tehran University of Medical Sciences; Founding President, Universal Scientific Education and Research Network (USERN), Tehran, Iran

Editorial Assistant

Niloufar Yazdanpanah

Managing Director, Network of Immunity in Infection, Malignancy and Autoimmunity (NIIMA), Universal Scientific Education and Research Network, (USERN); and School of Medicine, Tehran University of Medical Sciences, Tehran, Iran

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Dedication

This book would not have been possible without the continuous encouragement from my family. I dedicate this book to my daughters, Ariana and Arnika, with the hope that we learn enough from today to make a brighter future for the next generation.

Contributors xi

Preface xv

Series editor biography xvii

Acknowledgment xix

Abbreviations xxi

1. Introduction on autoimmunity and associated conditions

Nima Rezaei and Niloufar Yazdanpanah

1 Introduction 1

2 Autoimmunity and infection 2

3 Autoimmunity and genetic syndromes 3

4 Autoimmunity and inborn errors of immunity 6

5 Autoimmunity and malignancies 8

6 Autoimmunity and associated conditions affecting patients’ quality of life 8

7 Conclusion 9

References 9

2. Cross talks between autoimmunity and cancer

Thalita Basso Scandolara, Leticia Madureira Pacholak, Isabella Morais Tavares, Rodrigo Kern, Leonardo Garcia-Velazquez, and Carolina Panis

1 Introduction 16

2 Autoimmunity and cancer mechanisms: Clinical features and similar mechanisms 18

3 Rheumatoid arthritis 28

4 Systemic lupus erythematosus 29

5 Sjögren’s syndrome 29

6 Systemic sclerosis 29

7 Idiopathic inflammatory myopathy 30

8 ANCA-associated vasculitis 30

9 Conclusion 39

References 40

3. Autoimmunity regulation within the tumor microenvironment

Irina Palacín-Aliana, Josefa Carrión-Navarro, Ángel Ayuso-Sacido, and Noemí García-Romero

1 Introduction 52

2 Targeting immune checkpoints in cancer immunotherapy 53

3 Coinhibitory checkpoint pathways to cancer 54

4 Costimulatory checkpoint pathways on cancer 60

5 Conclusion 63 References 63

4. Mechanisms of immune tolerance breakdown in inborn errors of immunity

Giuliana Giardino, Emilia Cirillo, Rosaria Prencipe, Roberta Romano, Francesca Cillo, Elisabetta Toriello, Veronica De Rosa, and Claudio Pignata

1 Introduction 74

2 Mechanisms implicated in the disruption of immune tolerance in IEI 74

3 Central tolerance disruption 75

4 Alterations of peripheral tolerance 83

5 Conclusion 88

References 89

5. Autoimmunity in combined immunodeficiency

Andrew R. Gennery

1 Introduction 97

2 Severe combined immunodeficiencies 101

3 Combined immunodeficiencies 106

4 Combined immunodeficiencies associated with significant autoimmunity 106

5 Combined immunodeficiencies rarely associated with autoimmunity 112

6 Combined immunodeficiencies not associated with autoimmunity 115

7 Conclusion 120 References 120

6. Autoimmunity and autoimmune diseases in primary selective IgM deficiency

Sudhir Gupta and Ankmalika Gupta

1 Introduction 129

2 Natural IgM antibodies 130

3 Role of IgM in autoimmunity and autoimmune diseases 131

4 Autoimmunity and autoimmune diseases in selective IgM deficiency 134

5 Conclusion 136 References 136

7. Autoimmunity and HIV infection

Luis Ramos Ruperto, Carmen Busca Arenzana, Angel Robles Marhuenda, and Jose I. Bernardino

1 Introduction 141

2 HIV structure 142

3 HIV infection 142

4 HIV and autoimmunity 149

5 Autoimmune diseases in the HIV patient 156

6 Conclusion 161 References 161

8. Autoimmune diseases and metabolic disorders: Molecular connections and potential therapeutic targets

Md Jamal Uddin, Dang Khoa Tran, Md Abdul Hannan, Hasan-Al-Faruque, Md. Ataur Rahman, Akhi Moni, Nguyen Thanh Lam, Vo Truong Nhu Ngoc, and Dinh-Toi Chu

1 Introduction 170

2 Molecular mechanisms of autoimmune responses and autoimmune diseases 171

3 Molecular connections between autoimmune diseases and some important metabolic disorders 173

4 Potential molecular targets to control autoimmune diseases and metabolic disorders 178

5 Conclusion 179 References 180

9. Autoimmunity and infertility

Tao Zhang, Xiaoyan Chen, Tin Chiu Li, Chi Chiu Wang, and Jacqueline Pui Wah Chung

1 Introduction 186

2 The association between autoimmunity and female infertility 186

3 The association between autoimmunity and male infertility 193

4 Clinical implications of serum autoantibodies in IVF/ICSI-ET 195

5 Conclusion 200

References 200

10. Autoimmune disease of the cardiovascular system Davood Shafie

1 Introduction 207

2 Rheumatic heart disease 208

3 Myocarditis 209

4 Vasculitis 213

5 Conclusion 221

References 221

11. Allergy and autoimmunity: Share of genetics and environment

Kalaivani Manibarathi, Chit Tong Lio, and Tanima Bose

1 Introduction 232

2 Key elements regulating allergy and autoimmune disease 232

3 Immunopathological reactions—Allergy and autoimmunity subtypes 247

4 Conclusion 250

References 251

12. Asthma and autoimmunity

Ourania S. Kotsiou

1 Introduction 261

2 Asthma endotypes—An overview 262

3 Autoimmune responses following chronic inflammation 265

4 Asthma and autoimmunity 265

5 Conclusion 278

References 279

13. Autoimmunity in interstitial lung disease

Gianluca Sambataro, Domenico Sambataro, Veronica Adiletta, and Paolo Maria Leone

1 Introduction 291

2 Interstitial lung disease in systemic sclerosis 293

3 Rheumatoid arthritis 298

4 Other rheumatic conditions associated with ILD 303

5 Conclusion 304 References 304

14. Role of autoimmunity in the pathogenesis of chronic obstructive pulmonary disease and pulmonary emphysema

Francesco Nucera, Phil M. Hansbro, Vincenzo Casolaro, Ramapraba Appanna, Paul Kirkham, Ian M. Adcock, and Gaetano Caramori

1 Introduction 312

2 Animal models of chronic obstructive pulmonary disease (COPD) and pulmonary emphysema 312

3 Autoimmune responses in the pathogenesis of stable COPD and pulmonary emphysema 315

4 Regulatory T (Treg) cells in the autoimmune pathogenesis of stable COPD and pulmonary emphysema 318

5 B-cells and autoantibody-mediated lung damage in the pathogenesis of stable COPD and pulmonary emphysema 318

6 Other autoantibodies in COPD and pulmonary emphysema 321

7 Complement system and autoimmunity in COPD and pulmonary emphysema 322

8 Role of the microbiota in COPD and pulmonary emphysema 323

9 Cell-mediated autoimmune lung damage in the pathogenesis of stable COPD and pulmonary emphysema 323

10 Therapeutic implications 324

11 Conclusion 325 References 325

15. Oxidative stress in oral autoimmune disorders

Mahdieh-Sadat Moosavi

1 Introduction 333

2 Oxidative stress and the immune system 334

3 Biomarkers of oxidative stress in oral autoimmune disorders 335

4 Antioxidants and related treatments for oral autoimmune disorders 338

5 Conclusion 340 References 341

16. Autoimmunity and psychosis

Milica M. Borovcanin, Marija Milovanovic, Katarina Vesic, Nemanja N. Muric, Jelena Milovanovic, Aleksandar N. Arsenijevic, and Nebojsa N. Arsenijevic

1 Introduction 343

2 Infection, inflammation, and autoimmunity in psychosis 344

3 Mechanisms of autoimmunity in the central nervous system 346

4 Autoimmune encephalitis and psychosis 348

5 Multiple sclerosis and psychosis 350

6 Autoimmune epilepsy and psychosis 352

7 Nonneurological autoimmune disorders and psychosis 353

8 Possible causal treatment of psychosis in autoimmune diseases 356

9 Conclusion 356 References 357

Index 367

Contributors

Ian M. Adcock National Heart and Lung Institute, Imperial College London, London, United Kingdom

Veronica Adiletta Fondazione Policlinico A. Gemelli IRCCS, Università Cattolica del Sacro Cuore, Rome, Italy

Ramapraba Appanna Department of Medicine, Surgery and Dentistry “Scuola Medica Salernitana”, University of Salerno, Salerno, Italy

Carmen Busca Arenzana HIV Unit, Department of Internal Medicine, Hospital Universitario La Paz, IdiPAZ, Madrid, Spain

Aleksandar N. Arsenijevic Center for Molecular Medicine and Stem Cell Research, Faculty of Medical Sciences, University of Kragujevac, Kragujevac, Serbia

Nebojsa N. Arsenijevic Center for Molecular Medicine and Stem Cell Research, Faculty of Medical Sciences, University of Kragujevac, Kragujevac, Serbia

Ángel Ayuso-Sacido Faculty of Experimental Sciences, Universidad Francisco de Vitoria; Brain Tumor Laboratory, Fundación Vithas, Grupo Hospitales Vithas; Faculty of Medicine, Universidad Francisco de Vitoria, Madrid, Spain

Jose I. Bernardino HIV Unit, Department of Internal Medicine, Hospital Universitario La Paz, IdiPAZ, Madrid, Spain

Milica M. Borovcanin Department of Psychiatry, Faculty of Medical Sciences, University of Kragujevac, Kragujevac, Serbia

Tanima Bose Institute for Clinical Neuroimmunology, Ludwig Maximilian University of Munich (LMU), Munich, Germany

Gaetano Caramori Pulmonology, Department of Biomedical Sciences, Dentistry and Morphological and Functional Imaging

(BIOMORF), University of Messina, Messina, Italy

Josefa Carrión-Navarro Faculty of Experimental Sciences, Universidad Francisco de Vitoria, Madrid, Spain

Vincenzo Casolaro Department of Medicine, Surgery and Dentistry “Scuola Medica Salernitana”, University of Salerno, Salerno, Italy

Xiaoyan Chen Department of Obstetrics and Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong Special Administrative Region; Shenzhen Baoan Women’s and Children’s Hospital, Shenzhen University, Shenzhen, China

Dinh-Toi Chu Center for Biomedicine and Community Health, VNU-International School, Hanoi, Viet Nam

Jacqueline Pui Wah Chung Department of Obstetrics and Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong Special Administrative Region

Francesca Cillo Department of Translational Medical Sciences—Section of Pediatrics, University of Naples Federico II, Naples, Italy

Emilia Cirillo Department of Translational Medical Sciences—Section of Pediatrics, University of Naples Federico II, Naples, Italy

Noemí García-Romero Faculty of Experimental Sciences, Universidad Francisco de Vitoria, Madrid, Spain

Leonardo Garcia-Velazquez University of Paraná, Unipar, Paraná, Brazil

Andrew R. Gennery Translational and Clinical Research Institute, Newcastle University, Paediatric Immunology + HSCT, Great North Children’s Hospital, Newcastle upon Tyne, United Kingdom

Contributors

Giuliana Giardino Department of Translational Medical Sciences—Section of Pediatrics, University of Naples Federico II, Naples, Italy

Ankmalika Gupta Foundation for Primary Immunodeficiency Diseases, Newport Beach, CA, United States

Sudhir Gupta Division of Basic and Clinical Immunology, University of California at Irvine, Irvine, CA, United States

Md Abdul Hannan Department of Biochemistry and Molecular Biology, Bangladesh Agricultural University, Mymensingh, Bangladesh

Phil M. Hansbro Centre for Inflammation, Centenary Institute and University of Technology Sydney, Faculty of Science, Sydney, NSW, Australia

Hasan-Al-Faruque ABEx Bio-Research Center, Dhaka, Bangladesh; Division of Biotechnology, Daegu Gyeongbuk Institute of Science and Technology, Daegu, Republic of Korea

Rodrigo Kern Laboratory of Tumor Biology, Post-Graduation Program in Applied Health Sciences, State University of West Paraná, Unioeste, Paraná, Francisco Beltrão, Brazil

Paul Kirkham Department of Biomedical Sciences and Physiology, School of Medicine, University of Wolverhampton, Wolverhampton, United Kingdom

Ourania S. Kotsiou Faculty of Nursing, School of Health Sciences, University of Thessaly, Larissa, Greece

Nguyen Thanh Lam Center for Biomedicine and Community Health, VNU-International School, Hanoi, Viet Nam

Paolo Maria Leone Fondazione Policlinico A. Gemelli IRCCS, Università Cattolica del Sacro Cuore, Rome, Italy

Tin Chiu Li Department of Obstetrics and Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Prince of Wales Hospital; Chinese University of Hong Kong-Sichuan University Joint Laboratory in Reproductive Medicine, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region

Chit Tong Lio Chair of Experimental Bioinformatics, Technical University of Munich, Freising; Chair of Computational Systems Biology, University of Hamburg, Hamburg, Germany

Kalaivani Manibarathi Department of Neurodegenerative Diseases, Hertie-Institute for Clinical Brain Research and Center of Neurology, University of Tübingen; Center for Neurodegenerative Diseases (DZNE), Tübingen, Germany

Angel Robles Marhuenda Autoimmune Diseases Unit, Department of Internal Medicine, Hospital Universitario La Paz, Madrid, Spain

Jelena Milovanovic Center for Molecular Medicine and Stem Cell Research, Faculty of Medical Sciences, University of Kragujevac, Kragujevac, Serbia

Marija Milovanovic Center for Molecular Medicine and Stem Cell Research, Faculty of Medical Sciences, University of Kragujevac, Kragujevac, Serbia

Akhi Moni ABEx Bio-Research Center, Dhaka, Bangladesh

Mahdieh-Sadat Moosavi Oral and Maxillofacial Medicine Department, School of Dentistry, Tehran University of Medical Sciences, Tehran, Iran

Nemanja N. Muric Department of Psychiatry, Faculty of Medical Sciences, University of Kragujevac, Kragujevac, Serbia

Vo Truong Nhu Ngoc School of Odonto Stomatology, Hanoi Medical University, Hanoi, Viet Nam

Francesco Nucera Pulmonology, Department of Biomedical Sciences, Dentistry and Morphological and Functional Imaging (BIOMORF), University of Messina, Messina, Italy

Leticia Madureira Pacholak Laboratory of Tumor Biology, Post-Graduation Program in Applied Health Sciences, State University of West Paraná, Unioeste, Paraná, Francisco Beltrão, Brazil

Irina Palacín-Aliana Atrys Health, Barcelona; Fundación de Investigación HM Hospitales, HM Hospitales, Madrid, Spain

Carolina Panis Laboratory of Tumor Biology, Post-Graduation Program in Applied Health Sciences, State University of West Paraná, Unioeste, Paraná, Francisco Beltrão, Brazil

Claudio Pignata Department of Translational Medical Sciences—Section of Pediatrics, University of Naples Federico II, Naples, Italy

Rosaria Prencipe Institute of Experimental Endocrinology and Oncology, National Research Council, Naples, Italy

Md. Ataur Rahman ABEx Bio-Research Center, Dhaka, Bangladesh; Center for Neuroscience, Korea Institute of Science and Technology (KIST), Seoul, Republic of Korea

Nima Rezaei Research Center for Immunodeficiencies, Children's Medical Center; Department of Immunology, School of Medicine, Tehran University of Medical Sciences; Network of Immunity in Infection, Malignancy and Autoimmunity (NIIMA), Universal Scientific Education and Research Network (USERN), Tehran, Iran

Roberta Romano Department of Translational Medical Sciences—Section of Pediatrics, University of Naples Federico II, Naples, Italy

Veronica De Rosa Institute of Experimental Endocrinology and Oncology, National Research Council, Naples, Italy

Luis Ramos Ruperto Autoimmune Diseases Unit, Department of Internal Medicine, Hospital Universitario La Paz, Madrid, Spain

Domenico Sambataro Artroreuma s.r.l., Outpatient Clinic of Rheumatology Associated With the National Health System, Mascalucia (CT), Italy

Gianluca Sambataro Department of Clinical and Experimental Medicine, Regional Referral Center for Rare Lung Diseases, “Policlinico S. Marco”, University of Catania, Catania; Artroreuma s.r.l., Outpatient Clinic of Rheumatology Associated With the National Health System, Mascalucia (CT), Italy

Thalita Basso Scandolara Post-Graduation Program in Biological Sciences (Genetics), Federal University of Rio de Janeiro, UFRJ,

Rio de Janeiro; Laboratory of Tumor Biology, Post-Graduation Program in Applied Health Sciences, State University of West Paraná, Unioeste, Paraná, Francisco Beltrão, Brazil

Davood Shafie Heart Failure Research Center, Cardiovascular Research Institute, Isfahan University of Medical Sciences, Isfahan, Iran

Isabella Morais Tavares University of Paraná, Unipar, Paraná, Brazil

Elisabetta Toriello Department of Translational Medical Sciences—Section of Pediatrics, University of Naples Federico II, Naples, Italy

Dang Khoa Tran Department of Anatomy, Pham Ngoc Thach University of Medicine, Ho Chi Minh City, Viet Nam

Md Jamal Uddin Graduate School of Pharmaceutical Sciences, College of Pharmacy, Ewha Womans University, Seoul, Republic of Korea; ABEx Bio-Research Center, Dhaka, Bangladesh

Katarina Vesic Department of Neurology, Faculty of Medical Sciences, University of Kragujevac, Kragujevac, Serbia

Chi Chiu Wang Department of Obstetrics and Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Prince of Wales Hospital; Li Ka Shing Institute of Health Sciences and School of Biomedical Sciences, The Chinese University of Hong Kong; Chinese University of Hong Kong-Sichuan University Joint Laboratory in Reproductive Medicine, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region

Niloufar Yazdanpanah Research Center for Immunodeficiencies, Children's Medical Center; School of Medicine, Tehran University of Medical Sciences; Network of Immunity in Infection, Malignancy and Autoimmunity (NIIMA), Universal Scientific Education and Research Network (USERN), Tehran, Iran

Tao Zhang Department of Obstetrics and Gynaecology, Faculty of Medicine, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong Special Administrative Region

Preface

The scientific world has witnessed remarkable developments in the field of immunology during recent decades. Novel discovery of genes related to different immune-mediated diseases has enhanced our knowledge about the immune system and its interactions with other systems in the human body and enlightened different aspects of its complexity that lead to promoting diagnostic strategies, designing more efficient therapeutic agents, and reducing potential morbidities and mortality. Due to the broad spectrum of immune-mediated diseases, from immunodeficiency to hypersensitivity and autoimmune diseases, the immune system diseases collectively contribute to a considerable prevalence, although every single immune-mediated disease represents a low prevalence.

The responsibility of applying the latest research findings had long been a concern for scientists. Translational research is recognized as a potential tool to utilize scientific findings in clinical settings and patients’ care.

Considering the wide spectrum of diseases related to the immune system besides the huge burden for individuals, health care settings, families, and society, identifying promising alternative diagnostic and therapeutic strategies through translational studies is of interest.

The Translational Immunology book series is a major new suite of books in immunology, which cover both basic and clinical immunology. The series seeks to discuss and provide foundational content from bench to bedside in immunology. This series intends to discuss recent immunological findings and translate them into clinical practice. The first volumes of this book series are specifically devoted to autoimmune diseases.

Translational Autoimmunity: Autoimmune Disease Associated With Different Clinical Features attempts to highlight the most important comorbidities and medical conditions associated with autoimmune diseases. Infections are one of the pivotal factors in inducing autoimmunity. However, patients with autoimmune diseases are prone to specific types of infections. Therefore, there is a bidirectional association between autoimmunity and infections. Autoimmune manifestations have been reported as representative symptoms of different genetic syndromes. Moreover, despite being recognized as different classes in the spectrum of immune-related diseases, autoimmunity is frequently reported in different types of inborn errors of immunity (IEIs). Cancer and autoimmunity each imparts a huge burden on patients; however, these conditions are mutually connected, which could multiply the burden. Autoimmunity could represent

as a manifestation of different cancers, while the risk of both solid tumors and hematological malignancies is enhanced in autoimmune diseases, mainly due to the chronic inflammatory state and different genetic mutations. Considering the chronic nature of autoimmune diseases, it massively affects patients’ quality of life because it is associated with more morbidities such as infertility, obesity, and mental disorders. This book starts by recapitulating the most important conditions associated with autoimmune diseases in Chapter 1, which briefly discusses the possible shared background of autoimmunity with each of the associated conditions. Chapters 2 and 3 reveal the complex association between autoimmunity and cancer. Chapters 4–6 dive deep into the association of autoimmunity with IEIs. The importance of human immunodeficiency virus (HIV) infection in the current epidemic of HIV is well known. Therefore, Chapter 7 is devoted to HIV (acquired immunodeficiency disease (AIDS)) and autoimmunity. Since autoimmune diseases massively affect patients’ quality of life due to the chronic course of the disease and the life-long need to take medications, assessing all the possible medical complications that could be prevented is of interest. To achieve this important aim, Chapters 8 and 9 discuss the association of autoimmunity with

metabolic disorders and infertility, respectively. Autoimmunity in respiratory diseases and autoimmune diseases of the cardiovascular system, as the two vital systems in the body, is explored in Chapters 10 (cardiovascular diseases), 11 (allergy), 12 (asthma), 13 (interstitial lung disease), and 14 (chronic obstructive pulmonary disease and emphysema). Chapter 15 portrays one of the important mechanisms of autoimmune-based injuries in oral diseases. Finally, Chapter 16 focuses on the association of autoimmune conditions with mental disorders to further highlight the role of the immune system in psychiatric diseases.

The Translational Immunology book series is the outcome of the invaluable contribution of scientists and clinicians from well-known universities/institutes worldwide. I hereby appreciate and acknowledge the expertise of all contributors for generously devoting their time and considerable effort in preparing their respective chapters. I also express my gratitude to Elsevier for providing me the opportunity to publish this book. Finally, I hope this translational book will be comprehensible, cogent, and of special value to researchers and clinicians who wish to extend their knowledge on immunology.

Series editor biography

Professor Nima Rezaei earned his MD from Tehran University of Medical Sciences and subsequently obtained an MSc in Molecular and Genetic Medicine and a PhD in Clinical Immunology and Human Genetics from the University of Sheffield, United Kingdom. He also received a short-term fellowship in

Pediatric Clinical Immunology and Bone Marrow Transplantation in the Newcastle General Hospital. Professor Rezaei is now Full Professor of Immunology and Vice Dean of International Affairs, School of Medicine, Tehran University of Medical Sciences, and the cofounder and head of the Research Center for Immunodeficiencies. He is also the founding president of Universal Scientific Education and Research Network (USERN). Professor Rezaei has already been the director of more than 50 research projects and has designed and participated in several international collaborative projects. Professor Rezaei is an editorial assistant and board member for more than 30 international journals. He has edited more than 30 international books, presented more than 500 lectures/posters in congresses/meetings, and published more than 1000 scientific papers in international journals.

Acknowledgment

I express my gratitude to the editorial assistant of this book, Dr. Niloufar Yazdanpanah, without whose contribution this book definitely would not have been completed.

Abbreviations

a-ANCA atypical antineutrophil cytoplasmic antibody

AAV ANCA-associated vasculitis

Abs antibodies

ACA anti-centromere antibodies

ACA anticardiolipin antibodies

ACEIs angiotensin-converting enzyme inhibitors

ACR American College of Rheumatology

AD atopic dermatitis

ADAR1 adenosine deaminase RNA specific

ADCC antibody-dependent cell-mediated cytotoxicity

ADCC antibody-dependent cellular cytotoxicity

AdMVs apoptosis-derived membrane vesicles

ADs autoimmune disease

AEC alveolar epithelial cells

AERD aspirin-exacerbated respiratory disease

AGS Aicardi-Goutières syndrome

AHR airway hyperresponsiveness

AI aortic insufficiency

AIDS acquired immunodeficiency syndrome

AIH autoimmune hepatitis

AIHA autoimmune hemolytic anemia

AIM apoptosis inhibitor of macrophage

AIP-1 autoimmune pancreatitis type-1

AIP-2 antiinflammatory protein-2

AIRE autoimmune regulator

AITD autoimmune thyroid disease

AITP autoimmune thrombocytopenic purpura

ALPS autoimmune lymphoproliferative syndrome

AMPA α-amino-3-hydroxy-5-methyl-4isoxazolepropionic acid

ANAs antinuclear antibodies

ANCA antineutrophil cytoplasmic antibodies

anti-CCP anti-cyclic citrullinated peptide antibodies

anti-dsDNA anti-double-stranded DNA

anti-ENAs antiextractable nuclear antigens antibodies

AOPP advanced oxidation protein products

AP autoimmune psychosis

AP-1 activator protein 1

APCs antigen-presenting cells

APDS activated phosphoinositide-3kinase δ syndrome

APECED autoimmune polyendocrinopathy, candidiasis, ectodermal dysplasia

aPL antiphospholipid antibodies

APS anti-phospholipid syndrome

AR allergic rhinitis

ARB angiotensin receptor blockers

ASA anti-sperm antibody

ASCA anti-Saccharomyces cerevisiae antibodies

ATA anti-thyroid antibodies

AZA azathiprine

B19v parvovirus B19

BAFF B-cell-activating factor belonging to the TNF family

BAFF(-R) B-cell-activating factor (receptor)

BALF bronchoalveolar lavage fluid

BALT bronchus-associated lymphoid tissue

BBB blood-brain barrier

BC Behçet’s disease

BCL10 B-cell CLL/lymphoma 10

BCR B-cell receptors

bDMARDS biologic disease-modifying antirheumatic drugs

Blimp-1 B-lymphocyte-induced maturation protein-1

BLyS B-lymphocyte stimulator

BMI body mass index

BP bullous pemphigoid

Bregs B regulatory cells

BTK Bruton tyrosine kinase

BTLA B- and T-lymphocyte associated

Abbreviations

C1, C2, C3, C4, C3a, complement proteins 3a, 3b, 5a, C3b, C5a, C5b-C9 5b-9

C-ANCA cytoplasmic antineutrophil cytoplasmic antibody

CARD11 caspase activation and recruitment domain 11

cART combination antiretroviral therapy

CAT catalase

CCL chemokine ligand

CCL-11 C-C motif chemokine 11

CCP cyclic citrullinated peptide

CCR7 C-C chemokine receptor type 7

CD cluster of differentiation

CD25 interleukin-2 receptor α chain

CD40L CD40 ligand

cDCs/myDCs conventional dendritic cells/ myeloid dendritic cells

cDMARDs biologic disease-modifying antirheumatic drugs

CENP-B centromeric protein B

CGD chronic granulomatous disease

CID combined immunodeficiency

CIPD chronic inflammatory demyelinating polyradiculoneuropathy

CK cytokeratin

CLL chronic lymphocytic leukemia

CMC chronic mucocutaneous candidiasis

CMR cardiac magnetic resonance

CMV cytomegalovirus

CNS central nervous system

COPD chronic obstructive pulmonary disease

CpG CpGoligodeoxynucleotides

CS cigarette smoke

CSCC cutaneous squamous cell carcinoma

CSF cerebrospinal fluid

CT computed tomography

CTD connective tissue disease

CTLA-4 cytotoxic T-lymphocyte antigen 4

CTLs cytotoxic T-lymphocytes

CTS cathepsin

CVDs cardiovascular diseases

CVID common variable immunodeficiency

CXR chest X-ray

CYC cyclophosphamide

cysLT cysteinyl leukotrienes

DAD diffuse alveolar damage

DAMPS danger-associated molecular patterns

DC dendritic cells

DCM dilated cardiomyopathy

DEDs death-effector domains

Derp-1 dermatophagoidespteronissinus with protease activity

DHEA dehydroepiandrosterone

DILS diffuse lymphocyte infiltration syndrome

DIP desquamative interstitial pneumonia

DISC death-inducing signaling complex

DLBCL diffuse large B-cell lymphoma

DLCO diffusing lung capacity for carbon monoxide

DM dermatomyositis

DMARDs disease-modifying anti-rheumatic drugs

DNA and RNA deoxyribonucleic acid, Ribonucleic acid

DOCK2 dedicator of cytokinesis 2

DOCK8 dedicator of cytokinesis 8

dsDNA double-stranded DNA

Dsg desmoglein

dSSc cutaneous diffuse SSc

DTC differentiated thyroid carcinomas

DTH/DHR delayed-type hypersensitivity

EAE experimental autoimmune encephalomyelitis

EBNA-1 EBV nuclear antigen 1

EBV Epstein-Barr virus

EC endothelial cells

ECM extracellular matrix

ECP eosinophil cationic protein

EDN eosinophil-derived neurotoxin

EETS eosinophil extracellular traps

EF elastin fragments

EGFR epidermal group factor receptor

EGPA Churg-Strauss syndrome or eosinophilic granulomatosis with polyangiitis

EMA European Medicines Agency

EMB endomyocardial biopsy

EPX eosinophil peroxidase

ERK extracellular signal-regulated kinase

ERM ezrin-radixin-moesin

EULAR European League against Rheumatism

FADD FAS-associated death domain

Fas type-II transmembrane protein of tumor necrosis factor family

FcR fragment of constant region

FcεRI high-affinity IgE receptor

FDA Food and Drug Administration

FEV1 forced expiratory volume in the first second

FFA free fatty acid

FGF fibroblast growth factor

FL follicular lymphoma

FOXP3 forkhead box protein 3

FSH follicle-stimulating hormone

FVC forced vital capacity

GABA gamma-amino butyric acid

GALT gut-associated lymphoid tissue

GC germinal center B cells

GCA giant cell arteritis

GCF gingival crevicularfluid

GCM giant cell myocarditis

GCs germinal centers

GCS glucocorticosteroid

G-CSF granulocyte colony-stimulating factor

GEF guanine nucleotide exchange factor

GITR glucocorticoid-induced tumor necrosis factor receptor

GITRL glucocorticoid-induced tumor necrosis factor receptor ligand

GM-CSF granulocyte-macrophage colonystimulating factor

GO gene-ontology

GoF gain of function

GPA granulomatosis with polyangiitis

GPCR G-protein-coupled receptors

GPCR-AABs G-protein-coupled receptors autoantibodies

GPx glutathione peroxidase

GvHD graft-versus-host disease

GWAS genome-wide association studies

H2A histone 2A

H2O2 hydrogen peroxide

HAART high-active antiretroviral therapy

HBV hepatitis B virus

HBV-PAN hepatitis B virus-associated polyarteritis nodosa

HCC hepatocellular carcinoma

hCG human chorionic gonadotropin

HCLO hypochlorousacid

HCV hepatitis C virus

HHV-6 human herpesvirus 6

HIV human immunodeficiency virus

HL Hodgkin’s lymphoma

HLA human leukocyte antigen

HLA-DOB HLA class II histocompatibility antigen, DO beta chain

HLA-DR human leukocyte antigen-DR isotype

HLA-E gene for HLA class I histocompatibility antigen, alpha chain E

HNP human neutrophil peptides

HR hazard ratio

HRCT high-resolution computed tomography

HSCT hematopoietic stem cell transplantation

HT Hashimoto’s thyroiditis

HVEM herpes virus entry mediator

IADs inflammatory autoimmune diseases

iBALT inducible bronchus-associated lymphoid tissue

IBD inflammatory bowel disease

IBM inclusion body myopathy

IBT immunobead test

IC immune-complex

ICAM-1 intercellular adhesion molecule-1

ICD implantable cardiac-defibrillator

ICOS(L) inducible T-cell co-stimulator (ligand)

ICs immune complexes

IDB inflammatory bowel diseases

IDO indoleamine 2,3-dioxygenase

IEI inborn errors of immunity

IFN interferon

Ig immunoglobulin

IgG4-RD’s IgG4 related autoimmune diseases

IgM immunoglobulin M

IgSF immunoglobulin superfamily

IIF indirect immunofluorescence

IIMs idiopathic inflammatory myopathies

IL interleukin

IL2RB gene for Interleukin 2 receptor subunit beta

ILC innate lymphoid cells

ILD interstitial lung disease

infDCs inflammatory dendritic cells

INS gene for insulin

IPAF interstitial pneumonia with autoimmune features (IPAF)

IPEX immunodysregulation, polyedocrinopathy, enteropathy, X-linked

IPF idiopathic pulmonary fibrosis

irAEs immune-related adverse effects

IRIS immune reconstitution inflammatory syndrome

ISGs interferon-stimulated genes

ITIM immunoreceptors tyrosine-based inhibitory motifs

Abbreviations

ITK interleukin-2-inducible T-lymphocyte kinase

ITP immune thrombocytopenic purpura

IUIS International Union of Immunological Societies

IVF in vitro fertilization or intracytoplasmic sperm injection (ICSI)-embryo transfer (ET)

IVIG intravenous immunoglobulin

JAK/STAT Janus kinase/signal transducers and activators for transcription

JIA juvenile idiopathic arthritis

K/BxN serum-transfer arthritis model in murine species

KD Kawasaki disease

KL-6 Krebs von den Lungen 6

LA lupus anticoagulant

LAG-3 lymphocyte activation gene-3

LAIR- 1 leukocyte-associated Ig-like receptor

LCV leukocytoclastic vasculitis

LF lymphoid follicles

LIF leukemia inhibitor factor

LIP lymphocytic interstitial pneumonia

LPS lipopolysaccharide

LRBA lipopolysaccharide-responsive beige-like anchor protein

lSSc cutaneous limited SSc

LT leukotriene

LTF lactoferrin

LVEF left ventricular ejection fraction

mAbs monoclonal antibodies

MAC membrane attack complex

MALT mucosa-associated lymphoid tissue

MAPK mitogen-activated protein kinase

MAR mixed agglutination reaction

MBP major basic protein

MCAF monocyte chemotactic and activating factor

MCC merkel cell carcinoma

MCL mantle cell lymphoma

MCP monocyte chemoattractant protein

MDA malondialdehyde

MDSCs myeloid-derived suppressor cells

MDT multidisciplinary team

MG myasthenia gravis

MGUS monoclonal gammopathy of undetermined significance

MHC major histocompatibility complex

MIF migration inhibition factor

miRNA microRNA

MM multiple myeloma

MMF mycophenolate mofetil

MMP mucous membrane pemphigoid

MMPs matrix metalloproteinases

MPA microscopic polyangiitis

MPN myeloproliferative neoplasms

MPO myeloperoxidase

MR mitral regurgitation

MS multiple sclerosis

mTECs medullary thymic epithelial cells

mTOR mammalian target of rapamycin

MUC5B gene encoding mucin 5B

MxA myxovirus resistance protein1

MZL marginal zone lymphoma

NA not available

NADPH nicotinamide adenine dinucleotide phosphate

NAFLD non-alcoholic fatty liver disease

NET neutrophil extracellular trap

NFAT nuclear factor of activated T cells

NF-kB nuclear factor kappa-light-chainenhancer of activated B cells

NHL non-Hodgkin’s lymphoma

NIK NF-κB inducing kinase

NK natural killer cells

NKT natural killer T cells

NLRP3 NLR family pyrin domaincontaining 3

NMDA N-methyl-d-aspartate

NMDA-R NMDA receptors

NMOSD neuromyelitisoptica spectrum disorders

NO nitric oxide

NSAIDs nonsteroidal antiinflammatory drugs

NSCLC non-small cell lung cancer

NSIP nonspecific interstitial pneumonia

NVC nailfoldvideocapillaroscopy

NYHA New York Heart Association

OD odds ratio

OLP oral lichen planus

OP organizing pneumonia

OSADs organ-specific autoimmune diseases

PA phosphatic acid

PAD peptidyl arginine deiminase

PADSDA produce anti-double-stranded DNA antibodies

PAMPs pathogen associated molecular patterns

PAN polyarteritis nodosa

P-ANCA perinuclear antineutrophil cytoplasmic antibody

PARN poly(A)-specific ribonuclease

PARs protease-activated receptors

PCMZL primary cutaneous marginal zone B-cell lymphoma

PCOS polycystic ovary syndrome

PCP phencyclidine

PCR polymerase chain reaction

PD-1 programmed cell death protein 1

PD-1H programmed death-1 homolog

pDC plasmacytoid dendritic cells

pDCs plasmacytoid DCs

PDGF platelet derived growth factor

PD-L1 programmed death ligand 1

PE phosphatidylethanolamine

PG phosphatidylglycerol

PI phosphatidylinositol

PI3Kδ δ subunit of phosphatidylinositol 4, 5 diphosphate 3 kinase

PIDD primary immunedeficiency disorders

PIMs proinflammatory mediators

PIRD primary immuneregulatory disorders

PKB protein kinase B

PM polymyositis

PM particular matters

PMR polymyalgia rheumatica

PNS paraneoplastic syndrome

POF premature ovarian failure

POLD DNA polymerase delta

PPL periplakin

PPRs pattern recognition receptors

PR3-ANCA ANCA against proteinase 3

PRRs pattern recognition receptors

PRTN transcription regulatory protein

PS phosphatidylserine

pSS primary Sjӧgren’s syndrome

PTC papillary thyroid cancer

PV pemphigus vulgaris

PYHIN1 gene of pyrin and HIN domain family member 1

QoL quality of life

RA rheumatoid arthritis

RAG1/2 recombination-activating gene 1/2

RAS recurrent aphthous stomatitis

RAS/MAPK rat sarcoma/mitogen-activated protein kinase

RCC renal cell carcinoma

R-CHOP rituximab-cyclophosphamidedoxorubicin-vincristineprednisolone

RCT randomized controlled trial

RETL1 rearranged during transfection ligand 1

RF rheumatoid factor

RHD rheumatic heart disease

RICD restimulation-induced cell death

RNS reactive nitrogen species

RORC2 retinoic acid-related-orphan receptor-gamma splice variant

RORγt retinoic acid-related orphan receptor γt

ROS reactive oxygen species

RP Raynaud’s phenomenon

RR risk relative

RSV respiratory syncytial virus

RTX rituximab

RUNX3 gene of Runt-related transcription factor 3

RV rhinovirus

SADs systemic autoimmune diseases

SAMHD1 SAM and HD domaincontaining deoxynucleosidetriphosphohydrolase 1

SAVI sting-associated vasculopathy with onset in infancy

SCCHN squamous cell carcinoma of the head and neck

SCID severe combined immunodeficiency

Scl-70 scleroderma antibodies

SCLC small-cell lung cancer

SE shared epitope

Se selenium

SFTPC surfactant protein C

SIgAD selective IgA deficiency

SIgMD selective IgM deficiency

SIR standardized Incidence Ratio

SjS Sjögren’s syndrome

SLE systemic lupus erythematosus

SMC smooth muscle cell

SMR standardized mortality ratio

SNP single-nucleotide polymorphism

SOCS3 secretion of cytokine signaling 3

SOD superoxide dismutase

SPENCD Spondyloen chrondro-dysplasia

SS systemic sclerosis

SSD scleroderma spectrum disorder

ssDNA single-stranded DNA

ST2 suppression of tumorigenicity 2

STAT signal transducer and activator of transcription

STK4 serine/threonine kinase 4

T1D type 1 diabetes mellitus

T2D type 2 diabetes

TA takayasu arteritis

TAAs tumor-associated antigens

TACI transmembrane activator and calcium-modulator and cyclophilin ligand interactor

TAMs tumor-associated macrophages

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Translational autoimmunity. volume 3: autoimmune disease associated with different clinical features by Education Libraries - Issuu