Rhizosphere Engineering
Edited by
Ramesh Chandra Dubey
Professor, Department of Botany and Microbiology, Gurukul Kangri
Vishwavidyalaya, Haridwar, Uttarakhand, India
Pankaj Kumar
Assistant Professor, Department of Microbiology, Dolphin (PG) Institute of Biomedical and Natural Science, Dehradun, Uttarakhand, India
Academic Press is an imprint of Elsevier
125 London Wall, London EC2Y 5AS, United Kingdom
525 B Street, Suite 1650, San Diego, CA 92101, United States
50 Hampshire Street, 5th Floor, Cambridge, MA 02139, United States
The Boulevard, Langford Lane, Kidlington, Oxford OX5 1GB, United Kingdom
Copyright © 2022 Elsevier Inc. All rights reserved.
No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or any information storage and retrieval system, without permission in writing from the publisher. Details on how to seek permission, further information about the Publisher’s permissions policies and our arrangements with organizations such as the Copyright Clearance Center and the Copyright Licensing Agency, can be found at our website: www.elsevier.com/permissions.
This book and the individual contributions contained in it are protected under copyright by the Publisher (other than as may be noted herein).
Notices
Knowledge and best practice in this field are constantly changing. As new research and experience broaden our understanding, changes in research methods, professional practices, or medical treatment may become necessary.
Practitioners and researchers must always rely on their own experience and knowledge in evaluating and using any information, methods, compounds, or experiments described herein. In using such information or methods they should be mindful of their own safety and the safety of others, including parties for whom they have a professional responsibility.
To the fullest extent of the law, neither the Publisher nor the authors, contributors, or editors, assume any liability for any injury and/or damage to persons or property as a matter of products liability, negligence or otherwise, or from any use or operation of any methods, products, instructions, or ideas contained in the material herein.
Library of Congress Cataloging-in-Publication Data
A catalog record for this book is available from the Library of Congress
British Library Cataloguing-in-Publication Data
A catalogue record for this book is available from the British Library
ISBN 978-0-323-89973-4
For information on all Academic Press publications visit our website at https://www.elsevier.com/books-and-journals
Publisher: Charlotte Cockle
Acquisitions Editor: Nancy J. Maragioglio
Editorial Project Manager: Bernadine A. Miralles
Production Project Manager: Bharatwaj Varatharajan
Cover Designer: Mark Rogers
Typeset by STRAIVE, India
Mātṛ Devo Bhav, Pitṛ Devo Bhav, Ācārya Devo Bhav
Tattirīya Upaniṣad 1.11.2.
(See God in Mother, Father, and Teachers.)
3.1
3.2.2
5.4
5.3.4
5.3.7
Ankita Sharma, Shardulya Shukla, and Sachin Kumar
9.3
9.6
9.7
CHAPTER 10
Kumutha Karunanantham, Srimathi Priya Lakshminarayanan, Anitha Krishnaswamy Ganesamurthi, Krishnamoorthy Ramasamy, and Vinu Radha Rajamony
Devendra Jain, Heena Saheewala, Suman Sanadhaya, Arunabh Joshi, Ali Asger Bhojiya, Abhishek Kumar Verma, and Santosh Ranjan Mohanty
CHAPTER 12 Zinc solubilizing rhizobacteria as soil health engineer
Shohini Chakraborty, Mamun Mandal, Arka Pratim Chakraborty, and Sukanta Majumdar
CHAPTER 13
Murugan Athiappan, S. Dinesh Kumar, S. Umamaheswari, and M. Rajaprabu
13.1
Ravindra Kale and Ajay Irmale
20.2 AHL-mediated intraspecies interaction in Gram-negative bacteria
20.3 Autoinducing peptides-mediated intraspecies interaction in Gram-positive bacteria .........................................................................................
20.4 Bacterial quorum-sensing systems in rhizosphere
20.4.1 TraI/TraR signaling system in Agrobacterium tumefaciens ........................
20.4.2 ExpI/ExpR-CarI/CarR-coupled quorum-sensing system in Erwania carotovora
20.4.3 LasI/LasR-RhlI/RhlR serial overlapping system in Pseudomonas aeruginosa ........................................................................
20.4.4 PlcR-PapR quorum-sensing system in Bacillus cereus ...............................
20.4.5 ComP/ComA quorum-sensing system in
Sughra Hakim, Muhammad Shoib Nawaz, Muhammad Jawad Siddique, Mahnoor Hayat, Umaira Gulzar, and Asma Imran
24.3
24.4
24.4.1
24.5
Edna Mary Varghese, Babanpreet Kour, S. Ramya, Namitha S. Kumar, M.S. Jisha, and B. Ramakrishnan
25.3.1
Contributors
Somen Acharya
DIHAR-DRDO Base Lab, Chandigarh, India
Nitin Adhapure
Department of Biotechnology and Microbiology, Vivekanand Arts Sardar Dalipsingh Commerce and Science College, Aurangabad, Maharashtra, India
Muhammad Ahmad
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad; Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
Neethu Asokan
Department of Microbiology, Sacred Heart College (Autonomous), Thirupattur, Tamil Nadu, India
Murugan Athiappan
Department of Microbiology, Periyar University, Salem, India
Ramasamy Balagurunathan
Department of Microbiology, Periyar University, Salem, Tamil Nadu, India
Ali Asger Bhojiya
Faculty of Science, U.S. Ostwal Science, Arts and Commerce College, Mangalwad, Chittorgarh, Rajasthan, India
Arka Pratim Chakraborty
Department of Botany, Raiganj University, Raiganj, West Bengal, India
Shohini Chakraborty
Microbiology and Microbial Biotechnology Laboratory, Department of Botany, University of Gour Banga, Malda, West Bengal, India
S. Dinesh Kumar
Department of Microbiology, Periyar University, Salem, India
Ramesh Chandra Dubey
Department of Botany and Microbiology, Gurukul Kangri Vishwavidyalaya, Haridwar, Uttarakhand, India
Hassan Etesami
Agriculture & Natural resources Campus, Faculty of Agricultural Engineering & Technology, Department of Soil Science, University of Tehran, Tehran, Iran
Anitha Krishnaswamy Ganesamurthi
Department of Soil Science & Agricultural Chemistry, Anbil Dharmalingam Agricultural College and Research Institute, Tamil Nadu Agricultural University, Trichy, Tamil Nadu, India
Neera Garg
Department of Botany, Panjab University, Chandigarh, India
Ranjan Ghosh
Department of Botany, Bankura Sammilani College, Bankura, West Bengal, India
N.A. Nanje Gowda
Department of Food Technology, Ramaiah University of Applied Sciences, Bangalore, India
Umaira Gulzar
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad; University of Bagh, Rawlakot, Azad Jammu and Kashmir, Pakistan
Chennappa Gurikar
Department of Food Technology, Ramaiah University of Applied Sciences, Bangalore, India
Sughra Hakim
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad; Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
K.N. Hanumantharaju
Department of Food Technology, Ramaiah University of Applied Sciences, Bangalore, India
Mahnoor Hayat
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad; Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
Natarajan Hemalatha
Department of Microbiology, Periyar University, Salem, Tamil Nadu, India
Asma Imran
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
Areeb Inamdar
Department of Biotechnology and Microbiology, Vivekanand Arts Sardar Dalipsingh Commerce and Science College, Aurangabad, Maharashtra, India
Ajay Irmale
Government Institute of Science, Aurangabad, India
Devendra Jain
Department of Molecular Biology and Biotechnology, Rajasthan College of Agriculture, Maharana Pratap University of Agriculture and Technology, Udaipur, Rajasthan, India
M.S. Jisha
School of Biosciences, Mahatma Gandhi University, Kottayam, Kerala, India
Arunabh Joshi
Department of Molecular Biology and Biotechnology, Rajasthan College of Agriculture, Maharana Pratap University of Agriculture and Technology, Udaipur, Rajasthan, India
Ravindra Kale
Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States
Kumutha Karunanantham
Department of Agricultural Microbiology, Agricultural College and Research Institute, Tamil Nadu Agricultural University, Madurai, Tamil Nadu, India
Harmanjit Kaur
Department of Botany, Akal University, Bathinda, Punjab, India
Jupinder Kaur
Department of Microbiology, Punjab Agricultural University, Ludhiana, Punjab, India
Manpreet Kaur
Department of Microbiology, College of Basic Sciences and Humanities, Punjab Agricultural University, Ludhiana, Punjab, India
Shilpi Kiran
Department of Botany, Patna Women’s College, Autonomous, Patna University, Patna, Bihar, India
Babanpreet Kour
Division of Microbiology, Indian Agricultural Research Institute, New Delhi, India
Jitendra Kumar
Department of Botany, Dolphin (PG) College of Science and Agriculture, Fatehgarh Sahib; Department of Biosciences, UIB, Chandigarh University, Mohali, Punjab, India
Namitha S. Kumar
School of Biosciences, Mahatma Gandhi University, Kottayam, Kerala, India
Pankaj Kumar
Department of Microbiology, Dolphin (PG) Institute of Biomedical and Natural Sciences, Dehradun, Uttarakhand, India
Rajeev Kumar
ICAR-IISR, Lucknow, India
Sachin Kumar
Dr B R Ambedkar NIT Jalandhar, Jalandhar, India
Sonali Kumari
Department of Botany, Patna University, Patna, Bihar, India
Srimathi Priya Lakshminarayanan
Department of Fruit Science, Horticultural College and Research Institute for Women, Tamil Nadu Agricultural University, Trichy, Tamil Nadu, India
Iqra Laraib
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad; Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
A.C. Lokesh
Department of Food Technology, Ramaiah University of Applied Sciences, Bangalore, India
Sukanta Majumdar
Microbiology and Microbial Biotechnology Laboratory, Department of Botany, University of Gour Banga, Malda, West Bengal, India
Mamun Mandal
Microbiology and Microbial Biotechnology Laboratory, Department of Botany, University of Gour Banga, Malda, West Bengal, India
Narayan Chandra Mandal
Mycology and Plant Pathology Laboratory, Department of Botany, Visva Bharati, Santiniketan, West Bengal, India
Santosh Ranjan Mohanty
Indian Institute of Soil Science, Indian Council of Agricultural Research, Bhopal, Madhya Pradesh, India
N.A. Nanje Gowda
Department of Food Technology, Ramaiah University of Applied Sciences, Bangalore, India
Muhammad Shoib Nawaz
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad; Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
Sapna Negi
Department of Microbiology and Biotechnology, DBS (PG) College, Dehradun, Uttarakhand, India
B.P. Netravati
Department of Food Technology, Ramaiah University of Applied Sciences, Bangalore, India
Fabio Lopes Olivares
Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Centro de Biociências e Biotecnologia (CBB), Laboratório de Biologia Celular e Tecidual (LBCT), Campos dos Goytacazes; Núcleo de Desenvolvimento de Insumos Biológicos para a Agricultura, Rio de Janeiro, RJ, Brazil
Vinu Radha Rajamony
Faculty of Agriculture, Karunya Institute of Technology and Sciences, Coimbatore, Tamil Nadu, India
M. Rajaprabu
Department of Microbiology, Periyar University, Salem, India
B. Ramakrishnan
Division of Microbiology, Indian Agricultural Research Institute, New Delhi, India
Krishnamoorthy Ramasamy
Department of Crop Management, Vanavarayar Institute of Agriculture, Pollachi, Tamil Nadu, India
S. Ramya
Division of Microbiology, Indian Agricultural Research Institute, New Delhi, India
Amrita Kumari Rana
Department of Microbiology, College of Basic Sciences and Humanities, Punjab Agricultural University, Ludhiana, Punjab, India
Asma Rehman
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
Elizabeth Lewis Roberts
Southern Connecticut State University, New Haven, CT, United States
Heena Saheewala
Department of Molecular Biology and Biotechnology, Rajasthan College of Agriculture, Maharana Pratap University of Agriculture and Technology, Udaipur, Rajasthan, India
Suman Sanadhaya
Department of Molecular Biology and Biotechnology, Rajasthan College of Agriculture, Maharana Pratap University of Agriculture and Technology, Udaipur, Rajasthan, India
Vishal Sangawe
Department of Biotechnology and Microbiology, Vivekanand Arts Sardar Dalipsingh Commerce and Science College, Aurangabad, Maharashtra, India
Murthy Sangeetha
Department of Microbiology, Periyar University, Salem, Tamil Nadu, India
Lidiane Figueiredo dos Santos
Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Centro de Biociências e Biotecnologia (CBB), Laboratório de Biologia Celular e Tecidual (LBCT), Campos dos Goytacazes; Núcleo de Desenvolvimento de Insumos Biológicos para a Agricultura, Rio de Janeiro, RJ, Brazil
Satyajit Saurabh
DNA Fingerprinting Laboratory, Bihar State Seed and Organic Certification Agency, Patna, Bihar, India
Ankita Sharma
Medicinal and Aromatic Plant Division, Defence Institute of High Altitude Research, Ladakh, India
Shardulya Shukla
Medicinal and Aromatic Plant Division, Defence Institute of High Altitude Research, Ladakh, India
Nagarajan Siddharthan
Department of Microbiology, Periyar University, Salem, Tamil Nadu, India
Muhammad Jawad Siddique
National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad; Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
Abha Singh
Department of Botany, Patna University, Patna, Bihar, India
Ajay Singh
Department of Food Technology, Mata Gujri College, Fatehgarh Sahib, Punjab, India
Archana Singh
GBPUAT, Pantnagar, Uttarakhand, India
M.Y. Sreenivasa
Department of Microbiology, University of Mysore, Mysore, India
Anoop Kumar Srivastava
ICAR-Central Citrus Research Institute, Nagpur, Maharashtra, India
Vivek Kumar Tiwari
DIHAR-DRDO Base Lab, Chandigarh, India
S. Umamaheswari
Department of Biotechnology, Manonmaniam Sundaranar University, Tirunelveli, India
Kayeen Vadakkan
Department of Biology, St. Mary’s College, Thrissur, Kerala, India
Edna Mary Varghese School of Biosciences, Mahatma Gandhi University, Kottayam, Kerala, India
Abhishek Kumar Verma Department of Biosciences, Manipal University Jaipur, Jaipur, Rajasthan, India
B.C. Verma CRURRS, ICAR-NRRI, Hazaribagh, India
Vivek Chandra Verma DIHAR-DRDO Base Lab, Chandigarh, India
Vishnu Department of Microbiology, Punjab Agricultural University, Ludhiana, Punjab, India
Pratibha Vyas
Department of Microbiology, College of Basic Sciences and Humanities, Punjab Agricultural University, Ludhiana, Punjab, India