New and Future Developments in Microbial Biotechnology and Bioengineering
Sustainable Agriculture: Advances in microbe-based biostimulants
Edited by Harikesh Bahadur Singh
Department of Biotechnology, Institute of Applied Sciences & Humanities, GLA University, Mathura
Anukool Vaishnav
Department of Biotechnology, Institute of Applied Sciences & Humanities, GLA University, Mathura ; Swiss Excellence Fellow, Agroecology and Environment, Agroscope (Reckenholz), Zürich, Switzerland
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ISBN: 978-0-323-85577-8
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Typeset by Aptara, New Delhi, India
Contributors xv
About the Editors xxi
Preface xxiii
1. Plant growth promoting rhizobacteria - Advances and future prospects 1
Cristine Marie B. Brown, Robert A. Nepomuceno, Julieta A. Anarna, Marilyn B. Brown
2. Prospects of beneficial microbes as a natural resource for sustainable legumes production under changing climate
Ayman EL Sabagh, Md.Sohidul Islam, Akbar Hossain, Muhammad
Aamir Iqbal, Muhammad Imran, Ali Raza, Arzu Çiğ, Allah Wasaya, Tauqeer Ahmad Yasir, Ade Sumiahadi, Khizer Amanet, Muhammad Mubeen, Singh Kulvir, Ram Swaroop Meena, Habib-ur-Rehman Athar, Subhan Danish, Muhammad Faheem Adil, Muhammad Ali Raza, Akihiro Ueda, Liu Liyun, Murat Erman
2.1
3. Trichoderma as biostimulant - a plausible approach to alleviate abiotic stress for intensive production practices 57
S. Abirami, S. Sree Gayathri, C. Usha
3.1 Introduction 57
3.2 Review of literature 59
3.3 Conclusion 75 References 76
4. Mode of action of different microbial products in plant growth promotion 85
Nishar Akhtar, Md.Mahtab Rashid, Shahina Perween, Gagan Kumar, Satyabrata Nanda
4.1 Introduction 85
4.2 Major microbial genera and their products 87
4.3 Mode of action(s) of microbes and their products 95
4.4 Direct benefits to the plant 104
4.5 Indirect benefits to the plant 107
4.6 Challenges in understanding the mode of action 107
4.7 Future perspectives and conclusion 108 References 109
5. Role of AM fungi in growth promotion of high-value crops 121
Manoj Parihar, Manoj Kumar Chitara, Hanuman Ram, Asha Kumari, Gopal Tiwari, Kiran Rana, Bisweswar Gorain, Utkarsh Kumar, Jaideep Kumar Bisht, Lakshmi Kant
5.1 Introduction 121
5.2 Arbuscular mycorrhizal fungi 122
5.3 AMF mediated benefits to high-value crops 123
5.4 AMF application in micro propagation programme 128
5.5 Commercialization of AM fungi 128
5.6 Challenges of AMF technology 134
5.7 Conclusion and future prospects 135
6. Pseudomonas and Bacillus: A biological tool for crop
A. Muthukumar, T. Suthin Raj, S.R. Prabhukarthikeyan, R. Naveen Kumar, U. Keerthana
6.1
6.2
6.3
6.4
7.
Ankita Singh, Akash Hidangmayum, Bhudeo Rana Yashu, Vivek Kumar, Bansh Narayan Singh, Padmanabh Dwivedi 7.1
7.2
7.3
7.4
7.5
7.6
8.
Avinash Marwal, Akhilesh Kumar Srivastava, R.K. Gaur
8.1
8.5
8.6
8.7
8.8
8.9
8.10 Recombinant viral biopesticides 187
8.11 A case study 187
8.12 Challenges and drawbacks 188
8.13 Major advantages 188
8.14 Conclusion, future prospects and take away 189 Acknowledgment 189 References 189
9. Microalgal based biostimulants as alleviator of biotic and abiotic stresses in crop plants 195
Sumit Kumar, Tulasi Korra, U.B. Singh, Shailendra Singh, Kartikay Bisen
9.1 Introduction 195
9.2 Positive effects of microalgal extract on plant growth and productivity 202
9.3 Microalgal biostimulants for managements of biotic and abiotic stress 204
9.4 Microalgal biostimulants emphasized under abiotic stress 205
9.5 Effects of microalgae biostimulants on biotic stress 206
9.6 Microalgal extract: a mixture with multifaceted mechanisms 207
9.7 Concluding remarks and future prospects 210 References 211
10. Utilization of omics approaches for underpinning plant-microbe interaction 217
Manmeet Kaur, Ravneet Kaur, H.S. Sodhi
10.1 Introduction 217
10.2 Plant- microbial communications 218
10.3 Rhizospheric root microbial interaction 218
10.4 Endosphere and microbial communication 219
10.5 Plant microbial interaction and quorum sensing 220
11.4
11.5 Ice-binding
11.7
11.8 Alkalophiles and acidophiles in relation to
11.9
11.10
11.11
11.13
12. Seed biopriming with biopesticide: A key to sustainability of agriculture
Sananda Mondal, Debasish Panda, Bandana Bose
12.1
12.2
12.3
12.5
12.6
12.7
13. Insights into novel cell immobilized microbial inoculants
Sharon Nagpal, K.C. Kumawat, Poonam Sharma
13.1
13.3
13.10
13.11
P. Sakthieaswari,
Kannan, S. Baby
15. Trichoderma spp. as bio-stimulant: Molecular insights 337
Efath Shahnaz, Ali Anwar, Saba Banday
15.1 Introduction 337
15.2 Hormones 339
15.3 Volatile organic compounds 340
15.4 Other secondary metabolites 340
15.5 Bioaugmentation and biostimulation of problem soils 341
15.6 Efficacy of microbial bio-stimulation 342
15.7 Synergistic actions 342
15.8 Formulations 343
15.9 Conclusions and future prospects 343 References 344
16. Enhancing the growth and disease suppression ability of Pseudomonas fluorescens 351
R.M. Gade, Mina D. Koche
16.1 Introduction 351
16.2 Mechanism of biocontrol by Pseudomonas 352
16.3 Plant growth promotions 355
16.4 Molecular confirmations of Pseudomonas fluorescens by 16S ribosomal RNA sequencing 356
16.5 Control of plant diseases in crops 356
16.6 Future prospects and conclusion 361 References
17. Synthetic biology tools: Engineering microbes for biotechnological applications 369
Vanshika Goyal, Isha Kohli, Vivek Ambastha, Priyanka Das, Prashant
Kumar Singh, Ajit Varma, Rachna Pandey, Naveen Chandra Joshi
17.1 Introduction 369
17.2 History of synthetic biology 370
17.3 Engineering central dogma of life 371
17.4
18. Role of microbial consortia in remediation of soil, water and environmental pollution caused by indiscriminate use of chemicals in agriculture: Opportunities and challenges
Lopamudra Behera, Diptanu Datta, Sunil Kumar, Sumit Kumar, Bana Sravani, Ram Chandra
Gajendra Mohan Baldodiya, Richita Saikia, Ricky Raj Paswan, Basanta Kumar Borah
20. Enhancement of plant nutrient uptake by bacterial biostimulants 435
Shalja Verma, Anand Kumar Pandey
20.1 Introduction 435
20.2 Plant nutrient uptake mechanisms 437
20.3 Biostimulants 438
20.4 Categories of biostimulants and their effect on plant growth and productivity 439
20.5 Indirect mechanism of bacterial biostimulants to enhance nutrient uptake 445
20.6 Direct mechanism of bacterial biostimulants to enhance plant nutrient uptake 447
20.7 Bacterial biostimulants to enhance the growth and stress tolerance 448
20.8 Bacterial biostimulants as biocontrol agents 449
20.9 Conclusion and prospects 450 References 450 Index 457
Contributors
S. Abirami CEOA Matriculation Higher Secondary School, Madurai, Tamil Nadu, India
Muhammad Faheem Adil Department of Agronomy, College of Agriculture and Biotechnology, Key Laboratory of Crop Germplasm Resource, Zhejiang University, Hangzhou, China
Nishar Akhtar Department of Plant Pathology, Birsa Agricultural University, Ranchi, Bihar, India
Khizer Amanet Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Pakistan
Vivek Ambastha Department of Plant Sciences, Migal Galilee Research Institute, Israel
K.S Anantharaju Department of Chemistry, Dayananda Sagar Collge of Engineering, Bangalore, Karnataka, India
Julieta A. Anarna National Institute of Molecular Biology and Biotechnology University of the Philippines, Los Banos (BIOTECH-UPLB)
Ali Anwar Division of Plant Pathology, Faculty of Horticulture, Sher-e-Kashmir
University of Agricultural Sciences & Technology-Kashmir, Shalimar Campus, Srinagar, Jammu & Kashmir, India
Habib-ur-Rehman Athar Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
S. Baby HS Biology faculty, Narayana e-techno School, Madurai, Tamil Nadu, India
Gajendra Mohan Baldodiya School of Biological Sciences, UM-DAE Centre for Excellence in Basic Science, Mumbai University, Kalina Campus, Santacruz (East), Mumbai, Maharashtra, India
Saba Banday Division of Plant Pathology, Faculty of Horticulture, Sher-e-Kashmir University of Agricultural Sciences & Technology-Kashmir, Shalimar Campus, Srinagar, Jammu & Kashmir, India
Lopamudra Behera Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Kartikay Bisen Faculty of Agricultural Sciences and Allied Industries, Rama University, Kanpur, Uttar Pradesh, India
Jaideep Kumar Bisht ICAR-Vivekananda Parvatiya Krishi Anusandhan Sansthan (VPKAS), Almora, Uttarakhand, India
Basanta Kumar Borah Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
Bandana Bose Department of Plant Physiology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Cristine Marie B. Brown National Institute of Molecular Biology and Biotechnology University of the Philippines, Los Banos (BIOTECH-UPLB)
Marilyn B. Brown National Institute of Molecular Biology and Biotechnology University of the Philippines, Los Banos (BIOTECH-UPLB)
Ram Chandra Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Manoj Kumar Chitara Department of Plant Pathology, College of Agriculture, GBPUAT, Panatnagar, Uttarakhand, India
Arzu Çiğ Department of Horticulture, Siirt University, Siirt, Turkey
Subhan Danish Department of Soil Science, Faculty of Agricultural Sciences and Technology, Bahauddin Zakariya University, Multan, Pakistan
Priyanka Das Division of Plant Biology, Bose Institute, Kolkata, West Bengal, India
Diptanu Datta Department of Plant Pathology, College of Agriculture, Odisha University of Agriculture and Technology, Bhubaneswar, Odisha, India
Padmanabh Dwivedi Department of Plant Physiology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Murat Erman Department of Field Crops, Faculty of Agriculture, Siirt University, Turkey
R.M. Gade Dr. Panjabrao Deshmukh Krishi Vidyapeeth, Akola, Maharashtra, India
R.K. Gaur Department of Biotechnology, DeenDayal Upadhyaya Gorakhpur University, Gorakhpur, Uttar Pradesh, India
Bisweswar Gorain ICAR-CSSRI, RRS Bharuch, Gujarat, India
Vanshika Goyal Amity Institute of Microbial Technology, Amity University, Noida, Uttar Pradesh, India
Akash Hidangmayum Department of Plant Physiology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Akbar Hossain Bangladesh Wheat and Maize Research Institute, Dinajpur, Bangladesh
Muhammad Imran University of Poonch Rawalakot, Department of Entomology, Rawalakot, Pakistan
Muhammad Aamir Iqbal University of Poonch Rawalakot, Department of Agronomy, Rawalakot, Pakistan
Md. Sohidul Islam Department of Agronomy, Hajee Mohammad Danesh Science and Technology University, Dinajpur, Bangladesh
Naveen Chandra Joshi Amity Institute of Microbial Technology, Amity University, Noida, Uttar Pradesh, India
Aarthy Kannan HS Biology faculty, Narayana e-techno School, Madurai, Tamil Nadu, India
Lakshmi Kant ICAR-Vivekananda Parvatiya Krishi Anusandhan Sansthan (VPKAS), Almora, Uttarakhand, India
Manmeet Kaur Department of Microbiology, Punjab Agricultural University, Ludhiana, Punjab, India
Ravneet Kaur Department of Microbiology, Punjab Agricultural University, Ludhiana, Punjab, India
U. Keerthana Crop Protection Division, ICAR-National Rice Research Institute, Cuttack, Odisha, India
Mina D. Koche Dr. Panjabrao Deshmukh Krishi Vidyapeeth, Akola, Maharashtra, India
Isha Kohli Amity Institute of Microbial Technology, Amity University, Noida, Uttar Pradesh, India
Tulasi Korra Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Singh Kulvir Punjab Agricultural University, Regional Research Station, Faridkot, Punjab, India
Gagan Kumar Department of Plant Pathology, M. S. Swaminathan School of Agriculture, Centurion University of Technology and Management, Odisha, India
Utkarsh Kumar ICAR-Vivekananda Parvatiya Krishi Anusandhan Sansthan (VPKAS), Almora, Uttarakhand, India
Vivek Kumar Department of Plant Physiology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Sumit Kumar Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Sunil Kumar Plant Protection, International Rice Research Institute (IRRI), Bhubaneswar, Odisha, India
Asha Kumari ICAR-Vivekananda Parvatiya Krishi Anusandhan Sansthan (VPKAS), Almora, Uttarakhand, India
K.C. Kumawat Department of Microbiology, Punjab Agricultural University, Ludhiana, Punjab, India
Liu Liyun Graduate School of Integrated Sciences for Life, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima, Japan
Avinash Marwal Department of Biotechnology, Mohanlal Sukhadia University, Udaipur, Rajasthan, India
Ram Swaroop Meena Department of Agronomy, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Sananda Mondal Department of Crop Physiology, Institute of Agriculture, VisvaBharati, Sriniketan, West Bengal, India
Veena S. More Department of Biotechnology, Sapthagiri College of Engineering, Bangalore, Karnataka, India
Sunil S. More School of Basic and Applied Sciences, Dayananda Sagar University, Bangalore, Karnataka, India
Muhammad Mubeen Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Pakistan
A. Muthukumar Department of Plant Pathology, Faculty of Agriculture, Annamalai University, Annamalai Nagar, Chidambaram, Tamil Nadu, India
Sharon Nagpal Department of Microbiology, Punjab Agricultural University, Ludhiana, Punjab, India
Ajay Nair School of Basic and Applied Sciences, Dayananda Sagar University, Bangalore, Karnataka, India
Satyabrata Nanda Department of Plant Biotechnology, M. S. Swaminathan School of Agriculture, Centurion University of Technology and Management, Odisha, India
R. Naveen Kumar Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Robert A. Nepomuceno National Institute of Molecular Biology and Biotechnology University of the Philippines, Los Banos (BIOTECH-UPLB)
Debasish Panda Department of Crop Physiology, Institute of Agriculture, VisvaBharati, Sriniketan, West Bengal, India
Rachna Pandey Department of Industrial and Production Engineering, G.B. Pant University of Agricultural and Technology, Pantnagar, Uttarakhand, India
Anand Kumar Pandey Department of Biotechnology Engineering, Institute of Engineering and Technology, Bundelkhand University, Jhansi, Uttar Pradesh, India
Manoj Parihar ICAR-Vivekananda Parvatiya Krishi Anusandhan Sansthan (VPKAS), Almora, Uttarakhand, India
Ricky Raj Paswan Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
Shahina Perween Department of Genetics and Plant Breeding, Birsa Agricultural University, Ranchi, Bihar, India
S.R. Prabhukarthikeyan Crop Protection Division, ICAR-National Rice Research Institute, Cuttack, Odisha, India
T. Suthin Raj Department of Plant Pathology, Faculty of Agriculture, Annamalai University, Annamalai Nagar, Chidambaram, Tamil Nadu, India
Hanuman Ram ICAR-Vivekananda Parvatiya Krishi Anusandhan Sansthan (VPKAS), Almora, Uttarakhand, India
Kiran Rana Department of Agronomy, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Archana S. Rao School of Basic and Applied Sciences, Dayananda Sagar University, Bangalore, Karnataka, India
Md. Mahtab Rashid Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Ali Raza Fujian Provincial Key Laboratory of Crop Molecular and Cell Biology, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou, Fujian, China
Muhammad Ali Raza College of Agronomy, Sichuan Agricultural University, Chengdu, P. R. China
Ayman EL Sabagh Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafrelsheikh, Egypt; Department of Field Crops, Faculty of Agriculture, Siirt University, Turkey
Richita Saikia Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India
P. Sakthieaswari Department of Botany and Microbiology, Lady Doak College, Madurai, Tamil Nadu, India
Efath Shahnaz Division of Plant Pathology, Faculty of Horticulture, Sher-e-Kashmir University of Agricultural Sciences & Technology-Kashmir, Shalimar Campus, Srinagar, Jammu & Kashmir, India
Poonam Sharma Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
Ankita Singh Department of Plant Physiology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh, India
Bansh Narayan Singh ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Maunath Bhanjan, Uttar Pradesh, India
U.B. Singh Faculty of Agricultural Sciences and Allied Industries, Rama University, Kanpur, Uttar Pradesh, India
Shailendra Singh ICAR- National Bureau of Agriculturally Important Microorganisms, Kushmaur, Maunath Bhanjan, Uttar Pradesh, India
Prashant Kumar Singh Department of Biotechnology, Mizoram University, Pachhunga University College Campus, Aizawl, MIZORAM, India
H.S. Sodhi Department of Microbiology, Punjab Agricultural University, Ludhiana, Punjab, India
Bana Sravani Department of Plant Pathology and Agricultural Microbiology, Post Graduate Institute, Mahatma Phule Krishi Vidyapeeth, Rahuri, Maharashtra, India
S. Sree Gayathri Department of Microbiology, The Madura College, Madurai, Tamil Nadu, India
Akhilesh Kumar Srivastava Department of Chemistry, Deendayal Upadhyaya Gorakhpur University, Gorakhpur, Uttar Pradesh, India
Ade Sumiahadi Department of Agrotechnology, Faculty of Agriculture, Universitas Muhammadiyah Jakarta, Indonesia
Gopal Tiwari ICAR-NBSS&LUP, Nagpur, Maharashtra, India
Akihiro Ueda Graduate School of Integrated Sciences for Life, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima, Japan
C. Usha Department of Biotechnology, Lady Doak College, Madurai, Tamil Nadu, India
Ajit Varma Amity Institute of Microbial Technology, Amity University, Noida, Uttar Pradesh, India
Shalja Verma Department of Biotechnology Engineering, Institute of Engineering and Technology, Bundelkhand University, Jhansi, Uttar Pradesh, India; Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology, Hauz Khas, New Delhi, India
Allah Wasaya College of Agriculture, BZU, Bahadur Sub-Campus Layyah, Pakistan
Bhudeo Rana Yashu ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Maunath Bhanjan, Uttar Pradesh, India
Tauqeer Ahmad Yasir College of Agriculture, BZU, Bahadur Sub-Campus Layyah, Pakistan
