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Fundamentals Plant Physiology of

Fundamentals Plant Physiology of

Lincoln Taiz

Professor Emeritus, University of California, Santa Cruz

Eduardo Zeiger

Professor Emeritus, University of California, Los Angeles

Ian Max Møller

Professor Emeritus, Aarhus University, Denmark

Angus Murphy

Professor, University of Maryland

SINAUER ASSOCIATES

About the cover

The eight plant illustrations shown on the cover are (clockwise from upper left): Arabidopsis, the pitcher plant, wheat, eastern skunk cabbage, mangrove, orchid, fall foliage, and Lithops. Arabidopsis, whose genome was the first to be sequenced, is the preferred model system for studying the molecular basis of plant growth and development. The pitcher plant is a carnivorous plant that supplements its nitrogen supply from the soil by digesting and assimilating insect protein. Wheat is an important cereal crop that, together with rice, provides more food energy for the world’s population than any other crop. Skunk cabbage is an unusual plant whose flower generates heat that helps it to emerge through the winter snow in early March; the heat also helps to volatilize the putrid smell the flower generates, that attracts fly pollinators. Mangrove trees, which grow with their roots in saline or brackish water, are adapted to salinity. Epiphytic orchids grow on the surfaces of trees and must obtain their water and mineral nutrients from the air, rain, and dust to which they are exposed. The fall foliage of deciduous trees exemplifies the process of seasonal leaf senescence. Finally, Lithops, or stone plant, is an example of a desert-adapted species that exhibits CAM-type photosynthesis.

Fundamentals of Plant Physiology

Oxford University Press is a department of the University of Oxford. It furthers the University’s objective of excellence in research, scholarship, and education by publishing worldwide. Oxford is a registered trade mark of Oxford University Press in the UK and certain other countries.

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Library of Congress Cataloging-in-Publication Data

Names: Taiz, Lincoln, author. | Zeiger, Eduardo, author. |Møller, I. M. (Ian Max), 1950- author. | Murphy, Angus S., author.

Title: Fundamentals of plant physiology / Lincoln Taiz, Eduardo Zeiger, Ian Max Møller, Angus Murphy.

Description: First edition. | New York, NY : Published in the United States of America by Oxford University Press, 2018. | Includes bibliographical references and index.

Identifiers: LCCN 2018014331 | ISBN 9781605357904 (paperbound)

Subjects: LCSH: Plant physiology--Textbooks. Classification: LCC QK711.2 .T34 2018 | DDC 571.2--dc23 LC record available at https://lccn.loc.gov/2018014331

9 8 7 6 5 4 3 2 1

Printed in the United States of America

Brief Contents

CHAPTER 1

CHAPTER 2

CHAPTER 3

CHAPTER 4

CHAPTER 5

CHAPTER 6

CHAPTER 7

CHAPTER 8

CHAPTER 9

CHAPTER 10

CHAPTER 11

CHAPTER 12

CHAPTER 13

CHAPTER 14

CHAPTER 15

CHAPTER 16

CHAPTER 17

CHAPTER 18

CHAPTER 19

Plant and Cell Architecture 1

Water and Plant Cells 45

Water Balance of Plants 65

Mineral Nutrition 91

Assimilation of Inorganic Nutrients 121

Solute Transport 147

Photosynthesis: The Light Reactions 181

Photosynthesis: The Carbon Reactions 213

Photosynthesis: Physiological and Ecological Considerations 243

Translocation in the Phloem 269

Respiration and Lipid Metabolism 303

Signals and Signal Transduction 341

Signals from Sunlight 369

Embryogenesis 391

Seed Dormancy, Germination, and Seedling

Establishment 411

Vegetative Growth and Senescence 445

Flowering and Fruit Development 473

Biotic Interactions 507

Abiotic Stress 537

Table of Contents

CHAPTER 1

Plant and Cell Architecture 1

Plant Life Processes: Unifying Principles 2

Plant Classification and Life Cycles 2

Box 1.1 Evolutionary Relationships among Plants 3

Plant life cycles alternate between diploid and haploid generations 4

Overview of Plant Structure 6

Plant cells are surrounded by rigid cell walls 6

P rimary and secondary cell walls differ in their components 7

T he cellulose microfibrils and matrix polymers are synthesized via different mechanisms 9

Plasmodesmata allow the free movement of molecules between cells 10

New cells originate in dividing tissues called meristems 11

Box 1.2 T he Secondary Plant Body 14

Plant Cell Types 15

Dermal tissue covers the surfaces of plants 15

Ground tissue forms the bodies of plants 15

Vascular tissue forms transport networks between different parts of the plant 17

Plant Cell Organelles 17

Biological membranes are bilayers that contain proteins 18

The Nucleus 20

Gene expression involves both transcription and translation 2 3

Posttranslational regulation determines the life span of proteins 2 3

The Endomembrane System 25

The endoplasmic reticulum is a network of internal membranes 2 5

Vacuoles have diverse functions in plant cells 26

Oil bodies are lipid-storing organelles 27

Microbodies play specialized metabolic roles in leaves and seeds 27

Independently Dividing Semiautonomous Organelles 28

Proplastids mature into specialized plastids in different plant tissues 31

Chloroplast and mitochondrial division are independent of nuclear division 31

The Plant Cytoskeleton 32

The plant cytoskeleton consists of microtubules and microfilaments 32

Actin, tubulin, and their polymers are in constant flux in the living cell 3 3

Microtubule protofilaments first assemble into flat sheets before curling into cylinders 3 4

Cytoskeletal motor proteins mediate cytoplasmic streaming and directed organelle movement 3 4

Cell Cycle Regulation 37

Each phase of the cell cycle has a specific set of biochemical and cellular activities 37

The cell cycle is regulated by cyclins and cyclindependent kinases 38

Mitosis and cytokinesis involve both microtubules and the endomembrane system 39

CHAPTER 2

Water and Plant Cells 45

Water in Plant Life 4 6

The Structure and Properties of Water

Water is a polar molecule that forms hydrogen bonds 47

Water is an excellent solvent 47

Water has distinctive thermal properties relative to its size 48

Water molecules are highly cohesive 48

Water has a high tensile strength 49

Diffusion and Osmosis 51

Diffusion is the net movement of molecules by random thermal agitation 51

4 6

CHAPTER 3

Water Balance of Plants 65

Water in the Soil 66

A negative hydrostatic pressure in soil water lowers soil water potential 66

Water moves through the soil by bulk flow 67

Water Absorption by Roots 68

Water moves in the root via the apoplast, symplast, and transmembrane pathways 69

Solute accumulation in the xylem can generate “root pressure” 70

Diffusion is most effective over short distances 52

Osmosis describes the net movement of water across a selectively permeable barrier 53

Water Potential 53

The chemical potential of water represents the free-energy status of water 53

Three major factors contribute to cell water potential 54

Water potentials can be measured 55

Water Potential of Plant Cells 55

Water enters the cell along a water potential gradient 56

Water can also leave the cell in response to a water potential gradient 56

Water potential and its components vary with growth conditions and location within the plant 58

Cell Wall and Membrane Properties 58

Small changes in plant cell volume cause large changes in turgor pressure 58

T he rate at which cells gain or lose water is influenced by plasma membrane hydraulic conductivity 60

Aquaporins facilitate the movement of water across plasma membranes 60

Plant Water Status 61

Physiological processes are affected by plant water status 61

Solute accumulation helps cells maintain turgor and volume 62

Water Transport through the Xylem 71

The xylem consists of two types of transport cells 71

Water moves through the xylem by pressure-driven bulk flow 73

Water movement through the xylem requires a smaller pressure gradient than movement through living cells 73

What pressure difference is needed to lift water 100 meters to a treetop? 74

The cohesion–tension theory explains water transport in the xylem 74

Xylem transport of water in trees faces physical challenges 76

Plants minimize the consequences of xylem cavitation 78

Water Movement from the Leaf to the Atmosphere 78

Leaves have a large hydraulic resistance 79

The driving force for transpiration is the difference in water vapor concentration 8 0

Water loss is also regulated by the pathway resistances 81

The boundary layer contributes to diffusional resistance 81

Stomatal resistance is another major component of diffusional resistance 82

The cell walls of guard cells have specialized features 82

An increase in guard cell turgor pressure opens the stomata 8 3

Coupling Leaf Transpiration and Photosynthesis: Light-dependent Stomatal Opening 85

Stomatal opening is regulated by light 8 5

Stomatal opening is specifically regulated by blue light 86

Water-use efficiency 87

Overview: The Soil–Plant–Atmosphere Continuum 87

CHAPTER 4

Mineral Nutrition 91

Essential Nutrients, Deficiencies, and Plant Disorders 92

Special techniques are used in nutritional studies 95

Nutrient solutions can sustain rapid plant growth 95

Mineral deficiencies disrupt plant metabolism and function 98

Analysis of plant tissues reveals mineral deficiencies 103

Treating Nutritional Deficiencies 104

Crop yields can be improved by the addition of fertilizers 105

Some mineral nutrients can be absorbed by leaves 106

Soil, Roots, and Microbes 106

Negatively charged soil particles affect the adsorption of mineral nutrients 107

Soil pH affects nutrient availability, soil microbes, and root growth 108

Excess mineral ions in the soil limit plant growth 109

Some plants develop extensive root systems 109

Root systems differ in form but are based on common structures 110

D ifferent areas of the root absorb different mineral ions 112

Nutrient availability influences root growth 114

Mycorrhizal symbioses facilitate nutrient uptake by roots 114

Nutrients move between mycorrhizal fungi and root cells 118

CHAPTER 5

Assimilation of Inorganic Nutrients 121

Nitrogen in the Environment 122

Nitrogen passes through several forms in a biogeochemical cycle 122

Unassimilated ammonium or nitrate may be dangerous 124

Nitrate Assimilation 125

Many factors regulate nitrate reductase 125

Nitrite reductase converts nitrite to ammonium 126

Both roots and shoots assimilate nitrate 127

Ammonium Assimilation 128

Converting ammonium to amino acids requires two enzymes 128

Ammonium can be assimilated via an alternative pathway 128

Transamination reactions transfer nitrogen 129

Asparagine and glutamine link carbon and nitrogen metabolism 130

Amino Acid Biosynthesis 130

Biological Nitrogen Fixation 131

Free-living and symbiotic bacteria fix nitrogen 131

Nitrogen fixation requires microanaerobic or anaerobic conditions 132

Symbiotic nitrogen fixation occurs in specialized structures 134

Establishing symbiosis requires an exchange of signals 13 4

Nod factors produced by bacteria act as signals for symbiosis 135

Nodule formation involves phytohormones 136

The nitrogenase enzyme complex fixes N2 138

Amides and ureides are the transported forms of nitrogen 139

Sulfur Assimilation 140

Sulfate is the form of sulfur transported into plants 140

Sulfate assimilation occurs mostly in leaves 140

Methionine is synthesized from cysteine 141

Phosphate Assimilation 141

Iron Assimilation 141

Roots modify the rhizosphere to acquire iron 141

Iron cations form complexes with carbon and phosphate 142

The Energetics of Nutrient Assimilation 143

CHAPTER 6

Solute Transport 147

Passive and Active Transport 148

Transport of Ions across

Membrane Barriers 150

Different diffusion rates for cations and anions produce diffusion potentials 151

How does membrane potential relate to ion distribution? 152

The Nernst equation distinguishes between active and passive transport 153

Proton transport is a major determinant of the membrane potential 154

Membrane Transport Processes 155

Channels enhance diffusion across membranes 156

Carriers bind and transport specific substances 158

Primary active transport requires energy 158

Secondary active transport uses stored energy 160

Kinetic analyses can elucidate transport mechanisms 161

Membrane Transport Proteins 163

The genes for many transporters have been identified 163

Transporters exist for diverse nitrogen-containing compounds 165

Cation transporters are diverse 166

Anion transporters have been identified 168

Transporters for metal and metalloid ions transport essential micronutrients 169

Aquaporins have diverse functions 170

Plasma membrane H+-ATPases are highly regulated P-type ATPases 170

The tonoplast H+-ATPase drives solute accumulation in vacuoles 171

H+-pyrophosphatases also pump protons at the tonoplast 173

Ion Transport in Stomatal Opening 173

Light stimulates ATPase activity and creates a stronger electrochemical gradient across the guard cell plasma membrane 173

Hyperpolarization of the guard cell plasma membrane leads to uptake of ions and water 175

Ion Transport in Roots 176

Solutes move through both apoplast and symplast 176

Ions cross both symplast and apoplast 176

Xylem parenchyma cells participate in xylem loading 178

CHAPTER 7

Photosynthesis: The Light Reactions 181

Photosynthesis in Higher Plants 182

General Concepts 182

Light has characteristics of both a particle and a wave 182

When molecules absorb or emit light, they change their electronic state 183

Photosynthetic pigments absorb the light that powers photosynthesis 185

Key Experiments in Understanding

Photosynthesis 186

Action spectra relate light absorption to photosynthetic activity 186

Photosynthesis takes place in complexes containing light-harvesting antennas and photochemical reaction centers 187

The chemical reaction of photosynthesis is driven by light 189

Light drives the reduction of NADP+ and the formation of ATP 189

Oxygen-evolving organisms have two photosystems that operate in series 190

Organization of the

Photosynthetic Apparatus 192

The chloroplast is the site of photosynthesis 192

Thylakoids contain integral membrane proteins 192

Photosystems I and II are spatially separated in the thylakoid membrane 193

Organization of Light-Absorbing

Antenna Systems 195

Antenna systems contain chlorophyll and are membrane-associated 195

The antenna funnels energy to the reaction center 195

Many antenna pigment–protein complexes have a common structural motif 196

Mechanisms of Electron Transport 197

Electrons from chlorophyll travel through the carriers organized in the Z scheme 197

Energy is captured when an excited chlorophyll reduces an electron acceptor molecule 199

The reaction center chlorophylls of the two photosystems absorb at different wavelengths 200

The PSII reaction center is a multi-subunit pigment–protein complex 201

Water is oxidized to oxygen by PSII 202

Pheophytin and two quinones accept electrons from PSII 202

Electron flow through the cytochrome b6 f complex also transports protons 203

Plastoquinone and plastocyanin carry electrons between photosystem II and photosystem I 205

The PSI reaction center reduces NADP+ 205

Cyclic electron flow generates ATP but no NADPH 206

Some herbicides block photosynthetic electron flow 206

Proton Transport and ATP Synthesis in the Chloroplast 207

CHAPTER 8

Photosynthesis:

The Carbon Reactions 213

The Calvin–Benson Cycle 214

The Calvin–Benson cycle has three phases: carboxylation, reduction, and regeneration 215

The fixation of CO2 via carboxylation of ribulose 1,5-bisphosphate and the reduction of the product 3-phosphoglycerate yield triose phosphates 215

The regeneration of ribulose 1,5-bisphosphate ensures the continuous assimilation of CO2 217

A n induction period precedes the steady state of photosynthetic CO2 assimilation 219

Many mechanisms regulate the Calvin–Benson cycle 220

Rubisco activase regulates the catalytic activity of Rubisco 2 21

Light regulates the Calvin–Benson cycle via the ferredoxin–thioredoxin system 2 21

Light-dependent ion movements modulate enzymes of the Calvin–Benson cycle 2 22

Photorespiration: The C 2 Oxidative Photosynthetic Carbon Cycle 222

The oxygenation of ribulose 1,5-bisphosphate sets in motion the C 2 oxidative photosynthetic carbon cycle 2 24

Photorespiration is linked to the photosynthetic electron transport chain 2 27

Inorganic Carbon–Concentrating Mechanisms 228

Inorganic Carbon–Concentrating Mechanisms: The C 4 Carbon Cycle 229

Malate and aspartate are the primary carboxylation products of the C4 cycle 2 29

The C4 cycle assimilates CO2 by the concerted action of two different types of cells 2 29

Bundle sheath cells and mesophyll cells exhibit anatomical and biochemical differences 2 31

The C4 cycle also concentrates CO2 in single cells 2 32

Light regulates the activity of key C4 enzymes 234

Photosynthetic assimilation of CO2 in C4 plants demands more transport processes than in C 3 plants 23 4

In hot, dry climates, the C4 cycle reduces photorespiration 234

Inorganic Carbon–Concentrating Mechanisms: Crassulacean Acid Metabolism (CAM) 235

Different mechanisms regulate C4 PEPCase and CAM PEPCase 2 37

CAM is a versatile mechanism sensitive to environmental stimuli 2 37

Accumulation and Partitioning of Photosynthates—Starch and Sucrose 238

CHAPTER 9

Photosynthesis: Physiological and Ecological Considerations 243

The Effect of Leaf Properties on Photosynthesis 245

Leaf anatomy and canopy structure maximize light absorption 245

Leaf angle and leaf movement can control light absorption 248

Leaves acclimate to sun and shade environments 249

Effects of Light on Photosynthesis in the Intact Leaf 250

Light-response curves reveal photosynthetic properties 250

Leaves must dissipate excess light energy 2 52

Absorption of too much light can lead to photoinhibition 255

Effects of Temperature on Photosynthesis in the Intact Leaf 256

Leaves must dissipate vast quantities of heat 2 56

There is an optimal temperature for photosynthesis 257

Photosynthesis is sensitive to both high and low temperatures 257

Photosynthetic efficiency is temperature-sensitive 258

Effects of Carbon Dioxide on Photosynthesis in the Intact Leaf 259

Atmospheric CO2 concentration keeps rising 2 59

CO2 diffusion to the chloroplast is essential to photosynthesis 260

CO2 imposes limitations on photosynthesis 261

How will photosynthesis and respiration change in the future under elevated CO2 conditions? 264

CHAPTER 10

Translocation in the Phloem 269

Patterns of Translocation: Source to Sink 270

Pathways of Translocation 271

Sugar is translocated in phloem sieve elements 272

Mature sieve elements are living cells specialized for translocation 272

Large pores in cell walls are the prominent feature of sieve elements 274

Damaged sieve elements are sealed off 275

Companion cells aid the highly specialized sieve elements 276

Materials Translocated in the Phloem 276

Phloem sap can be collected and analyzed 277

Sugars are translocated in a nonreducing form 278

Other solutes are translocated in the phloem 278

Rates of Movement 280

The Pressure-Flow Model, a Passive Mechanism for Phloem Transport 280

An osmotically generated pressure gradient drives translocation in the pressure-flow model 281

Some predictions of pressure flow have been confirmed, while others require further experimentation 282

There is no bidirectional transport in single sieve elements, and solutes and water move at the same velocity 283

The energy requirement for transport through the phloem pathway is small in herbaceous plants 283

Sieve plate pores appear to be open channels 284

Pressure gradients in the sieve elements may be modest; pressures in herbaceous plants and trees appear to be similar 284

Phloem Loading 285

Phloem loading can occur via the apoplast or symplast 285

Abundant data support the existence of apoplastic loading in some species 287

Sucrose uptake in the apoplastic pathway requires metabolic energy 287

Phloem loading in the apoplastic pathway involves a sucrose–H+ symporter 288

Phloem loading is symplastic in some species 288

The polymer-trapping model explains symplastic loading in plants with intermediary-type companion cells 288

Phloem loading is passive in several tree species 290

Phloem Unloading and Sink-to-Source Transition 29 0

Phloem unloading and short-distance transport can occur via symplastic or apoplastic pathways 29 0

Transport into sink tissues requires metabolic energy 291

The transition of a leaf from sink to source is gradual 292

Photosynthate Distribution:

Allocation and Partitioning 294

Allocation includes storage, utilization, and transport 294

Various sinks partition transport sugars 295

Source leaves regulate allocation 295

Sink tissues compete for available translocated photosynthate 297

Sink strength depends on sink size and activity 297

T he source adjusts over the long term to changes in the source-to-sink ratio 298

Transport of Signaling Molecules 298

Turgor pressure and chemical signals coordinate source and sink activities 298

Proteins and RNAs function as signal molecules in the phloem to regulate growth and development 299

Plasmodesmata function in phloem signaling 299

CHAPTER 11

Respiration and Lipid Metabolism 303

Overview of Plant Respiration 303

Glycolysis 306

Glycolysis metabolizes carbohydrates from several sources 307

The energy-conserving phase of glycolysis extracts usable energy 309

Plants have alternative glycolytic reactions 310

In the absence of oxygen, fermentation regenerates the NAD+ needed for glycolytic ATP production 310

The Oxidative Pentose Phosphate Pathway 311

The oxidative pentose phosphate pathway produces NADPH and biosynthetic intermediates 313

The oxidative pentose phosphate pathway is redox-regulated 313

The Tricarboxylic Acid Cycle 314

Mitochondria are semiautonomous organelles 314

Pyruvate enters the mitochondrion and is oxidized via the TCA cycle 315

The TCA cycle of plants has unique features 317

Mitochondrial Electron Transport and ATP Synthesis 318

The electron transport chain catalyzes a flow of electrons from NADH to O2 318

The electron transport chain has supplementary branches 320

ATP synthesis in the mitochondrion is coupled to electron transport 321

Transporters exchange substrates and products 322

Aerobic respiration yields about 60 molecules of ATP per molecule of sucrose 324

Plants have several mechanisms that lower the ATP yield 324

Short-term control of mitochondrial respiration occurs at different levels 326

Respiration is tightly coupled to other pathways 328

Respiration in Intact Plants and Tissues 329

Plants respire roughly half of the daily photosynthetic yield 329

Respiratory processes operate during photosynthesis 329

Different tissues and organs respire at different rates 3 30

Environmental factors alter respiration rates 3 31

Lipid Metabolism 332

Fats and oils store large amounts of energy 3 33

Triacylglycerols are stored in oil bodies 3 33

Polar glycerolipids are the main structural lipids in membranes 3 34

Membrane lipids are precursors of important signaling compounds 3 34

Storage lipids are converted into carbohydrates in germinating seeds, releasing stored energy 3 36

CHAPTER 12

Signals and Signal Transduction 341

Temporal and Spatial Aspects of Signaling 342

Signal Perception and Amplification 343

Signals must be amplified intracellularly to regulate their target molecules 3 44

Ca 2+ is the most ubiquitous second messenger in plants and other eukaryotes 3 44

Changes in the cytosolic or cell wall pH can serve as second messengers for hormonal and stress responses 345

Reactive oxygen species act as second messengers mediating both environmental and developmental signals 347

Hormones

and Plant Development 347

Auxin was discovered in early studies of coleoptile bending during phototropism 3 49

Gibberellins promote stem growth and were discovered in relation to the “foolish seedling disease” of rice 3 49

Cytokinins were discovered as cell division–promoting factors in tissue culture experiments 351

Ethylene is a gaseous hormone that promotes fruit ripening and other developmental processes 3 51

Abscisic acid regulates seed maturation and stomatal closure in response to water stress 3 51

Brassinosteroids regulate floral sex determination, photomorphogenesis, and germination 3 52

Salicylic acid and jasmonates function in defense responses 353

Strigolactones suppress branching and promote rhizosphere interactions 3 53

Phytohormone Metabolism and

Homeostasis 353

Indole-3-pyruvate is the primary intermediate in auxin biosynthesis 3 54

Gibberellins are synthesized by oxidation of the diterpene ent-kaurene 354

Cytokinins are adenine derivatives with isoprene side chains 3 55

Ethylene is synthesized from methionine via the intermediate ACC 3 55

Abscisic acid is synthesized from a carotenoid intermediate 355

Brassinosteroids are derived from the sterol campesterol 356

Strigolactones are synthesized from β-carotene 358

Signal Transmission and Cell–Cell Communication 358

Hormonal Signaling Pathways 359

The cytokinin and ethylene signal transduction pathways are derived from the bacterial twocomponent regulatory system 3 59

Receptor-like kinases mediate brassinosteroid signaling 360

The core ABA signaling components include phosphatases and kinases 362

Plant hormone signaling pathways generally employ negative regulation 362

Protein degradation via ubiquitination plays a prominent role in hormone signaling 362

Plants have mechanisms for switching off or attenuating signaling responses 36 3

The cellular response output to a signal is often tissue-specific 363

Cross-regulation allows signal transduction pathways to be integrated 363

CHAPTER 13

Signals from Sunlight 369

Plant Photoreceptors 372

Photoresponses are driven by light quality or spectral properties of the energy absorbed 372

Plant responses to light can be distinguished by the amount of light required 375

Phytochromes 375

Phytochrome is the primary photoreceptor for red and far-red light 375

Phytochrome can interconvert between Pr and Pfr forms 376

Phytochrome Responses 377

Phytochrome responses vary in lag time and escape time 377

Phytochrome responses fall into three main categories based on the amount of light required 378

Phytochrome A mediates responses to continuous far-red light 379

Phytochrome regulates gene expression 380

Blue-Light Responses and Photoreceptors 380

Blue-light responses have characteristic kinetics and lag times 381

Cryptochromes 381

Blue-light irradiation of the cryptochrome FAD chromophore causes a conformational change 382

The nucleus is a primary site of cryptochrome action 382

Cryptochrome interacts with phytochrome 382

Phototropins 383

Phototropism requires changes in auxin mobilization 384

Phototropins regulate chloroplast movements 384

Stomatal opening is regulated by blue light, which activates the plasma membrane H+-ATPase 385

The Coaction of Phytochrome, Cryptochrome, and Phototropins 386

Responses to Ultraviolet Radiation 387

CHAPTER 14

Embryogenesis 391

Overview of Embryogenesis 393

Comparative Embryology of Eudicots and Monocots 393

Morphological similarities and differences between eudicot and monocot embryos dictate their respective patterns of development 394

Apical–basal polarity is maintained in the embryo during organogenesis 396

Embryo development requires regulated communication between cells 398

Auxin signaling is essential for embryo development 400

Polar auxin transport is mediated by localized auxin efflux carriers 401

Auxin synthesis and polar transport regulate embryonic development 404

Radial patterning guides formation of tissue layers 404

The protoderm differentiates into the epidermis 405

The central vascular cylinder is elaborated by cytokinin-regulated progressive cell divisions 40 5

Formation and Maintenance of Apical Meristems 4 06

Auxin and cytokinin contribute to the formation and maintenance of the RAM 406

SAM formation is also influenced by factors involved in auxin movement and responses 407

Cell proliferation in the SAM is regulated by cytokinin and gibberellin 408

CHAPTER 15

Seed Dormancy, Germination, and Seedling Establishment 411

Seed Structure 412

Seed anatomy varies widely among different plant groups 412

Seed Dormancy 415

There are two basic types of seed dormancy mechanisms: exogenous and endogenous 415

Non-dormant seeds can exhibit vivipary and precocious germination 416

The ABA:GA ratio is the primary determinant of seed dormancy 417

Release from Dormancy 419

Light is an important signal that breaks dormancy in small seeds 419

Some seeds require either chilling or after-ripening to break dormancy 419

Seed dormancy can be broken by various chemical compounds 420

Seed Germination 4 21

Germination and postgermination can be divided into three phases corresponding to the phases of water uptake 4 21

Mobilization of Stored Reserves 4 23

The cereal aleurone layer is a specialized digestive tissue surrounding the starchy endosperm 4 23

Seedling Establishment 4 25

The development of emerging seedlings is strongly influenced by light 4 25

Gibberellins and brassinosteroids both suppress photomorphogenesis in darkness 4 26

Hook opening is regulated by phytochrome, auxin, and ethylene 4 26

Vascular differentiation begins during seedling emergence 4 27

Growing roots have distinct zones 4 27

Ethylene and other hormones regulate root hair development 4 28

Lateral roots arise internally from the pericycle 4 28

Cell Expansion: Mechanisms and Hormonal Controls 4 30

The rigid primary cell wall must be loosened for cell expansion to occur 4 30

Microfibril orientation influences growth directionality of cells with diffuse growth 4 31

Acid-induced growth and cell wall yielding are mediated by expansins 4 32

Auxin promotes growth in stems and coleoptiles, while inhibiting growth in roots 4 33

The outer tissues of eudicot stems are the targets of auxin action 4 33

The minimum lag time for auxin-induced elongation is 10 minutes 4 34

Auxin-induced proton extrusion loosens the cell wall 4 34

Ethylene affects microtubule orientation and induces lateral cell expansion 4 35

Tropisms: Growth in Response

to Directional Stimuli 4 35

Auxin transport is polar and gravity-independent 436

The Cholodny–Went hypothesis is supported by auxin movements and auxin responses during gravitropic growth 4 37

Gravity perception is triggered by the sedimentation of amyloplasts 4 38

Gravity sensing may involve pH and calcium ions (Ca 2+) as second messengers 4 39

Phototropins are the light receptors involved in phototropism 440

Phototropism is mediated by the lateral redistribution of auxin 4 40

Shoot phototropism occurs in a series of steps 4 41

CHAPTER 16

Vegetative

Growth and Senescence 445

The Shoot Apical Meristem 4 45

The shoot apical meristem has distinct zones and layers 446

Leaf Structure and Phyllotaxy 4 47

Auxin-dependent patterning of the shoot apex begins during embryogenesis 4 48

Differentiation of Epidermal Cell Types 450

A specialized epidermal lineage produces guard cells 451

Venation Patterns in Leaves 452

The primary leaf vein is initiated in the leaf primordium 452

Auxin canalization initiates development of the leaf trace 452

Shoot Branching and Architecture 454

Auxin, cytokinins, and strigolactones regulate axillary bud outgrowth 454

The initial signal for axillary bud growth may be an increase in sucrose availability to the bud 456

Shade Avoidance 457

Reducing shade avoidance responses can improve crop yields 458

Root System Architecture 458

Plants can modify their root system architecture to optimize water and nutrient uptake 458

Monocots and eudicots differ in their root system architecture 458

Root system architecture changes in response to phosphorus deficiencies 459

Plant Senescence 4 61

During leaf senescence, nutrients are remobilized from the source leaf to vegetative or reproductive sinks 462

The developmental age of a leaf may differ from its chronological age 462

Leaf senescence may be sequential, seasonal, or stress-induced 463

The earliest cellular changes during leaf senescence occur in the chloroplast 464

Reactive oxygen species serve as internal signaling agents in leaf senescence 464

Plant hormones interact in the regulation of leaf senescence 465

Leaf Abscission 4 67

The timing of leaf abscission is regulated by the interaction of ethylene and auxin 467

Whole Plant Senescence 4 69

Angiosperm life cycles may be annual, biennial, or perennial 469

Nutrient or hormonal redistribution may trigger senescence in monocarpic plants 470

CHAPTER 17

Flowering and Fruit Development 473

Floral Evocation: Integrating Environmental Cues 474

The Shoot Apex and Phase Changes 474

Plant development has three phases 475

Juvenile tissues are produced first and are located at the base of the shoot 475

Phase changes can be influenced by nutrients, gibberellins, and epigenetic regulation 476

Photoperiodism: Monitoring Day Length 476

Plants can be classified according to their photoperiodic responses 477

Photoperiodism is one of many plant processes controlled by a circadian rhythm 479

Circadian rhythms exhibit characteristic features 479

Circadian rhythms adjust to different day–night cycles 481

The leaf is the site of perception of the photoperiodic signal 482

Plants monitor day length by measuring the length of the night 482

Night breaks can cancel the effect of the dark period 482

Photoperiodic timekeeping during the night depends on a circadian clock 483

A coincidence model links oscillating light sensitivity and photoperiodism 484

Phytochrome is the primary photoreceptor in photoperiodism 486

Vernalization: Promoting

Flowering with Cold 4 87

Long-distance Signaling

Involved in Flowering 4 88

Gibberellins and ethylene can induce flowering 489

Floral Meristems and Floral Organ Development 490

The SAM in Arabidopsis changes with development 491

The four different types of floral organs are initiated as separate whorls 491

Two major categories of genes regulate floral development 492

The ABC model partially explains the determination of floral organ identity 492

Pollen Development 494

Female Gametophyte Development in the Ovule 495

Functional megaspores undergo a series of free nuclear mitotic divisions followed by cellularization 495

Pollination and Double Fertilization in Flowering Plants 496

Two sperm cells are delivered to the female gametophyte by the pollen tube 497

Pollination begins with adhesion and hydration of a pollen grain on a compatible flower 497

Pollen tubes grow by tip growth 497

Double fertilization results in the formation of the zygote and the primary endosperm cell 498

Fruit Development and Ripening 498

Arabidopsis and tomato are model systems for the study of fruit development 498

Fleshy fruits undergo ripening 500

Ripening involves changes in the color of fruit 500

Fruit softening involves the coordinated action of many cell wall–degrading enzymes 501

Taste and flavor reflect changes in acids, sugars, and aroma compounds 502

The causal link between ethylene and ripening was demonstrated in transgenic and mutant tomatoes 502

Climacteric and non-climacteric fruits differ in their ethylene responses 503

CHAPTER 18

Biotic Interactions 507

Beneficial Interactions between Plants and Microorganisms 509

Other types of rhizobacteria can increase nutrient availability, stimulate root branching, and protect against pathogens 509

Harmful Interactions

of

Pathogens

and Herbivores with Plants 510

Mechanical barriers provide a first line of defense against insect pests and pathogens 511

Specialized plant metabolites can deter insect herbivores and pathogen infection 513

Plants store constitutive toxic compounds in specialized structures 514

Plants often store defensive chemicals as nontoxic water-soluble sugar conjugates in specialized vacuoles 517

Inducible Defense Responses to Insect Herbivores

519

Plants can recognize specific components of insect saliva 519

Phloem feeders activate defense signaling pathways similar to those activated by pathogen infections 520

Jasmonic acid activates defense responses against insect herbivores 520

Hormonal interactions contribute to plant–insect herbivore interactions 521

JA initiates the production of defense proteins that inhibit herbivore digestion 521

Herbivore damage induces systemic defenses 522

Long-distance electrical signaling occurs in response to insect herbivory 522

Herbivore-induced volatiles can repel herbivores and attract natural enemies 524

Herbivore-induced volatiles can serve as long-distance signals within and between plants 525

Insects have evolved mechanisms to defeat plant defenses 526

Plant Defenses against Pathogens 526

Microbial pathogens have evolved various strategies to invade host plants 526

Pathogens produce effector molecules that aid in the colonization of their plant host cells 527

Pathogen infection can give rise to molecular “danger signals” that are perceived by cell surface pattern recognition receptors (PRRs) 528

R proteins provide resistance to individual pathogens by recognizing strain-specific effectors 528

The hypersensitive response is a common defense against pathogens 530

A single encounter with a pathogen may increase resistance to future attacks 531

Plant Defenses against Other Organisms 531

Some plant parasitic nematodes form specific associations through the formation of distinct feeding structures 531

Plants compete with other plants by secreting allelopathic secondary metabolites into the soil 533

Some plants are biotrophic pathogens of other plants 533

CHAPTER 19

Abiotic Stress 537

Defining Plant Stress 538

Physiological adjustment to abiotic stress involves trade-offs between vegetative and reproductive development 539

Acclimation versus Adaptation 5 40

Environmental Stressors 5 41

Water deficit decreases turgor pressure, increases ion toxicity, and inhibits photosynthesis 5 41

Salinity stress has both osmotic and cytotoxic effects 543

Temperature stress affects a broad spectrum of physiological processes 5 43

Flooding results in anaerobic stress to the root 5 44

Light stress can occur when shade-adapted or shade-acclimated plants are subjected to full sunlight 544

Heavy metal ions can both mimic essential mineral nutrients and generate ROS 5 45

Combinations of abiotic stresses can induce unique signaling and metabolic pathways 5 45

Sequential exposure to different abiotic stresses sometimes confers cross-protection 5 47

Plants use a variety of mechanisms to sense abiotic stress 5 47

Physiological Mechanisms That Protect Plants against Abiotic Stress 5 48

Plants can alter their morphology in response to abiotic stress 5 48

Metabolic shifts enable plants to cope with a variety of abiotic stresses 5 49

Heat shock proteins maintain protein integrity under stress conditions 5 49

Membrane lipid composition can adjust to changes in temperature and other abiotic stresses 550

Chloroplast genes respond to high-intensity light by sending stress signals to the nucleus 551

A self-propagating wave of ROS mediates systemic acquired acclimation 551

Abscisic acid and cytokinins are stress-response hormones that regulate drought responses 552

Plants adjust osmotically to drying soil by accumulating solutes 553

Epigenetic mechanisms and small RNAs provide additional protection against stress 555

Submerged organs develop aerenchyma tissue in response to hypoxia 556

Glossary G–1

Illustration Credits IC–1

Index I–1

Antioxidants and ROS-scavenging pathways protect cells from oxidative stress 558

Exclusion and internal tolerance mechanisms allow plants to cope with toxic metal and metalloid ions 559

Plants use cryoprotectant molecules and antifreeze proteins to prevent ice crystal formation 560

Preface

Over the course of publishing six editions of Plant Physiology (now Plant Physiology and Development), it has become abundantly clear to us that, as a consequence of the spectacular advances in plant developmental genetics, the field of plant physiology has broadened in scope and increased in depth to the point where it is no longer possible for a single textbook to serve the needs of all courses on plant physiology.

Based on extensive feedback from instructors affiliated with a wide range of universities and colleges, we designed Fundamentals of Plant Physiology for instructors seeking a shorter text that emphasizes concepts as opposed to detailed, comprehensive coverage. To accommodate instructors wishing to focus their lectures on canonical plant physiology topics, the treatment of plant development, including hormonal signaling and photoreceptors, has been greatly condensed and reorganized. In keeping with a conceptual approach, genetic pathways have been streamlined by prioritizing functional mechanisms and by substituting descriptive terms for three-letter gene names whenever possible.

Throughout the text, explanations have been revised for easier comprehension, and figures have been simplified and annotated for greater clarity. To further improve readability, we have switched to a single-column format that includes a running glossary in the margins. In working on Fundamentals of Plant Physiology, our primary goal has been to provide a more concise, accessible, and focused treatment of the field of plant physiology, while at the same time maintaining the high standard of scientific accuracy and pedagogical richness for which Plant Physiology and Development is known.

We wish to thank Massimo Maffei for his suggested revisions to the physiological chapters. This book could not have been produced without the extensive help and support of the outstanding team of professionals at Sinauer Associates, now an imprint of Oxford University Press. We are especially grateful to our project editor, Laura Green, whose considerable expertise in plant physiology and biochemistry, and thorough dissection and critique of each chapter, which sometimes entailed major reorganizing,

helped us to optimize the logical flow of topics and avoid as many factual errors as is humanly possible. Our second line of defense against errors and stylistic problems was our tireless copyeditor, Liz Pierson, who did wonders to shape the newly designed chapters into a seamless, integrated, and coherent whole. As always, the talented artist Elizabeth Morales implemented all the changes we requested to existing figures and created several new, attractive figures as well.

We owe the new single-column format of the book, including the running glossary, to the creative talents of Chris Small and his production team. Ann Chiara designed the inside of the book and crafted the layout. Another new design feature was use of chapter openers featuring plants pertinent to each chapter’s content. Mark Siddall, our photo researcher, is responsible for finding the many fine and appropriate photos for use as chapter openers, and Beth Roberge Friedrichs deserves credit for designing the distinctive new cover for Fundamentals of Plant Physology We are also grateful to Johanna Walkowicz for laying the foundation for the book’s conception by devising and compiling surveys obtained from a wide selection of instructors. Thanks to her detailed analysis of the data, we were able to identify those topics of plant physiology that were most often covered in courses.

Finally, we extend our deepest gratitude to our publisher, Andy Sinauer, whose creative and innovative contributions to Fundamentals of Plant Physiology, as well as to previous editions of Plant Physiology and Development, are too numerous to list. Andy is retiring this year, and we are extremely sorry to see him go. He leaves behind a magnificent legacy, Sinauer Associates, that is second to none among publishers of scientific textbooks. Although we will sorely miss Andy’s wisdom and invaluable insights, we look forward to a productive ongoing relationship with our new publisher, Oxford University Press.

L incoln Taiz E duardo Zeiger

Ian Max Moller A ngus Murphy

April 2018

Editors

Lincoln Taiz is Professor Emeritus of Molecular, Cellular, and Developmental Biology at the University of California at Santa Cruz. He received his Ph.D. in Botany from the University of California at Berkeley in 1971. Dr. Taiz’s main research focus has been on the structure, function, and evolution of vacuolar H+-ATPases. He has also worked on gibberellins, cell wall mechanical properties, metal tolerance, auxin transport, and stomatal opening.

Ian Max Møller is Professor Emeritus of Molecular Biology and Genetics at Aarhus University, Denmark. He received his Ph.D. in Plant Biochemistry from Imperial College, London, UK. He has worked at Lund University, Sweden and, more recently, at Risø National Laboratory and the Royal Veterinary and Agricultural University in Copenhagen, Denmark. Professor Møller has investigated plant respiration throughout his career. His current interests include turnover of reactive oxygen species and the role of protein oxidation in plant cells.

Eduardo Zeiger is Professor Emeritus of Biology at the University of California at Los Angeles. He received a Ph.D. in Plant Genetics at the University of California at Davis in 1970. His research interests include stomatal function, the sensory transduction of blue-light responses, and the study of stomatal acclimations associated with increases in crop yields.

Angus Murphy has been a Professor and Chair of the Department of Plant Science and Landscape Architecture at the University of Maryland since 2012. He earned his Ph.D. in Biology from the University of California at Santa Cruz in 1996 and moved to Purdue University as an assistant professor in 2001. Dr. Murphy studies ATP-Binding Cassette transporters, the regulation of auxin transport, and the mechanisms by which transport proteins are regulated in plastic plant growth.

Contributors

Sarah M. Assmann

Christine Beveridge

Robert E. Blankenship

Arnold J. Bloom

Eduardo Blumwald

John Browse

Bob B. Buchanan

Victor Busov

John Christie

Daniel J. Cosgrove

Susan Dunford

James Ehleringer

Jürgen Engelberth

Lawrence Griffing

N. Michele Holbrook

Andreas Madlung

Ron Mittler

Gabriele B. Monshausen

Wendy Peer

Allan G. Rasmusson

Darren R. Sandquist

Graham B. Seymour

Sally Smith

Joe H. Sullivan

Heven Sze

Bruce Veit

Philip A. Wigge

Ricardo A. Wolosiuk

Media and Supplements to accompany Fundamentals of Plant Physiology

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Ancillary Resource Center (oup-arc.com)

Includes the following resources to aid instructors in developing their courses and delivering their lectures:

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1 Plant and Cell Architecture

Plant physiology is the study of plant processes—how plants grow, develop, and function as they interact with their physical (abiotic) and living (biotic) environments. Although this book will emphasize the physiological and biochemical functions of plants, it is important to recognize that, whether we are talking about gas exchange in the leaf, water conduction in the xylem, photosynthesis in the chloroplast, ion transport across membranes, signal transduction pathways involving light and hormones, or gene expression during development, all of these physiological and biochemical functions depend entirely on structures. Function derives from structures interacting at every level of scale, from molecules to organisms.

The cell is the fundamental organizational unit of plants and all other living organisms. The term cell is derived from the Latin cella, meaning “storeroom” or “chamber.” It was first used in biology in 1665 by the English scientist Robert Hooke to describe the individual units of the honeycomb-like structure he observed in cork under a compound microscope. The cork “cells” Hooke observed were actually the empty lumens of dead cells surrounded by cell walls, but the term is an apt one, because cells are the basic building blocks that define plant structure.

Groups of specialized cells form specific tissues, and specific tissues arranged in particular patterns are the basis of three-dimensional organs. Plant anatomy is the study of the macroscopic arrangements of cells and tissues within organs, and plant cell biology is the study of the organelles and other small components that make up each cell. Improvements in both light and electron microscopy continue to reveal the astonishing variety and dynamics of cellular processes and their contributions to physiological functions.

Remi Masson/Biosphoto/Getty

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