Developmentin WastewaterTreatment Researchand Processes
MicrobialDegradationof XenobioticsThroughBacterial andFungalApproach
Editedby
SusanaRodriguez-Couto
DepartmentofSeparationScience,LUTSchoolof EngineeringScience,LUTUniversity,Mikkeli,Finland
EnvironmentalMicrobiologyLab,Bharuch,Gujarat,India
MaulinP.Shah
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TypesetbyTNQTechnologies
2.6
2.5.1Purebacterialculturesfordyedegradation.................................................28
2.5.2Mixedculturesandcoculturesfordegradation...........................................29
2.5.3Immobilizedcellsfordegradation...............................................................29
2.5.4Microbialfuelcellsfordegradation............................................................30
2.6.2Degradationviamediation...........................................................................32
2.6.3Decolorizationviaorganicandinorganiccompounds................................32
2.7 Factorsaffectingbacterialdegradationofdyes.....................................................32
2.7.1Aerationandagitation..................................................................................32
4.3.3Biodegradation................................................................................................64
4.3.4Bioconversion.................................................................................................65
4.4 Kindsofbioremediators...........................................................................................65
4.4.1White-rotfungi...............................................................................................65
4.4.2Marinefungi...................................................................................................68
4.4.3Extremophilicfungi........................................................................................69
4.4.4Symbioticfungi..............................................................................................69
4.4.5Otherkindsofmushrooms.............................................................................69
4.5 Factorsaffectingmycoremediation..........................................................................70
4.5.1Temperatureeffectonmycoremediation.......................................................70
4.5.2pHeffectonmycoremediation.......................................................................70
4.5.3Relativehumidityeffectonmycoremediation..............................................71
4.5.4Effectofoxygen,light,traceelements,andaerationon
4.6 Differenttypesoftargetedcontaminants.................................................................71
4.6.1Volatileorganiccompounds...........................................................................71
4.7 Enzymesinvolvedinbioremediation.......................................................................75
5.1
5.1.1Hydrocarbon(petroleum)contaminationofsurfacewaterand
5.1.2Managementofhydrocarboncontaminatedwater........................................92
5.2 Microbialbioremediationofhydrocarbon(petroleum)contaminatedwater..........94
5.2.1Advantagesofmicrobialbioremediationtechnique......................................96
5.2.2Currentadvancesinmicrobialbioremediationtechnique.............................97
5.2.3Mechanismsofbioremediatingactivitybymicroorganisms.......................102
5.2.4Currentadvancesinapplicationofmicrobialbioremediation....................105
5.3 Challengesandrecommendations..........................................................................109
5.3.1Challenges....................................................................................................109
6.1
6.2
7.4
7.3.12Vanadium....................................................................................................151
7.3.13Zinc.............................................................................................................152
CHAPTER8Microbialdegradationofdye-containingwastewater
8.1
8.5
8.6
8.7
8.8
8.12
CHAPTER9MicrobialbioremediationofheavymetalsbyMarinebacteria
RajaHusain,NitinVikram,GarimaYadav,DeepakKumar, SonikaPandey,MonikaPatel,N.A.KhanandTouseefHussain
9.1 Introduction...........................................................................................................177
9.2 Typesofmarinebacteriainvolvedinmetalbioremediation...............................179 9.2.1Diversityofmarinebacteria.......................................................................180
9.3 Mechanismofmicrobialbioremediationofmetals.............................................181 9.3.1Remediationandmetals.............................................................................181
9.4 Microbialbioremediationanditsmechanism......................................................182
9.5 Microbialremediationofheavymetalsfromthesoil.........................................183
9.6 Microbialbioremediationofmetalsfromwater..................................................184
9.7 Advantagesanddisadvantagesofmicrobialbioremediation..............................185
9.14 Factorsaffectingheavymetalbioremediationbyalgae......................................194
9.15 Factorsaffectingthemicrobialbioremediationofheavymetals........................195
9.15.1Physiochemicalfactorsaffectingbioremediation....................................196
9.15.2Biologicalfactorsaffectingbioremediationprocesses............................196
9.15.3Climatechangeandbioremediationprocesses........................................196
10.2.1Chemistryofcyanideandtheirvariousforms........................................206 10.2.2Sourcesofcyanide...................................................................................208
10.2.3Cyanidedischargefromindustriesandpollution....................................209
10.2.4Toxicologicaleffectsofcyanide..............................................................211
10.2.5Effluentdisposalstandardsofcyanide.....................................................213
10.3 Factorsresponsibleforthebiodegradationofcyanides......................................213
10.3.1Concentrationofcyanides........................................................................214
10.3.2Availabilityofnutrients............................................................................214
10.3.3Availabilityofoxygen..............................................................................214
10.4.1Hydrolyticpathway..................................................................................216
10.4.2Oxidativepathway....................................................................................217
10.4.3Reductivepathway...................................................................................218
10.4.4Substitution/transferpathway...................................................................219
10.4.5Synthasespathways..................................................................................219
10.5 Advancesincyanidebiodegradationtechnologies..............................................220
10.6 Conclusionandfutureprospects..........................................................................221
CHAPTER11Microbial-mediatedexplosivesremovalanditsimpact onTNT,RDX,andHMX ...................................................................
11.1
KomalAgrawalandPradeepVerma
11.4
11.5 Anoverviewoftheenvironmentalfateofexplosives.........................................228
11.6
CHAPTER12Advancementinmicrobialbioremediation
DixitaChettri,BhaskarSharmaandAnilKumarVerma
12.1
12.2
12.3
12.3.1Microbialstructure...................................................................................246
12.3.2Environmentalfactors..............................................................................247
12.3.3Physiochemicalcharacteristicofthecontaminant..................................247
12.4
12.6
12.7
12.5.2Biosurfactants...........................................................................................254
12.5.3Chemotaxisandtransport.........................................................................254
CHAPTER13Counterbalancingcommonexplosivepollutants(TNT,RDX,
14.5.6Enzymes-basedbiodegradationofvariousindustrialpollutants...........324
14.5.7Enzymeoxidoreductases........................................................................324
14.5.8Enzymeperoxidases...............................................................................325
14.5.9Enzymelaccases.....................................................................................327
14.5.10Enzymehydrolases.................................................................................327
14.5.11Limitationsandrecentadvances............................................................328
14.6 Conclusion............................................................................................................330
CHAPTER15Cyanoremediation:acleanandgreenapproachtowardthe sustainableenvironment ................................................................
SubhasishDutta,DebojitGhosh,ArunimaLahiri, SourishChakrabortyandSoumyaPandit
15.1 Introduction...........................................................................................................335
15.2 Cyanobacteriaataglance.....................................................................................338
15.2.1Microbiologyofcyanobacteria................................................................338
15.3 Cyanobacteriaaspotentialfood,feed,andbioenergysource.............................338
15.4 Cyanoremediation acleanandgreentechnologytowardsustainable
15.4.1Characteristicsofcyanobacteria..............................................................340
15.4.2Differentcyanoremediationapproaches..................................................340
LucianaPortodeSouzaVandenberghe,NelsonLibardiJunior, KimKleyValladares-Diestra,SusanGraceKarp, JoyceGueirosWanderleySiqueira,CristineRodriguesand CarlosRicardoSoccol
16.6.2Classificationofnanozymes.....................................................................372
16.6.3Nanozymesappliedinbioremediationprocesses....................................373 16.6.4Futureprospects.......................................................................................374
CHAPTER17AnapproachtowardthebiodegradationofPAHsbymicrobial
SubhasishDuttaandSayanLaha
17.1 Introduction...........................................................................................................383
17.2 PAH-degradingpathwaysbydifferentbacteriaandfungi...................................385
17.3 RemovalofPAHsfromthesoilbybacteria........................................................395
18.2.3Asphaltenesandwaxes.............................................................................413
18.3 Impactofpetroleumhydrocarbononsoil............................................................415
18.3.1Soilfertility...............................................................................................415
18.3.2Soilmicroflora..........................................................................................415
18.4 Removalofpetroleumhydrocarbon.....................................................................417
18.4.1Bacterialbiodegradationofpetroleumhydrocarbon...............................417
18.4.2Fungalbiodegradationofpetroleumhydrocarbons.................................419
18.5 Conclusions...........................................................................................................421
CHAPTER19Deep-marinebacteria
19.1 Introduction...........................................................................................................429
19.2 Sourcesofheavymetals.......................................................................................431
19.2.1Toxiceffectsofheavymetalsonsealife................................................432
19.3 Characteristicsanddiversityofdeep-marinebacteria.........................................433
19.4 Deep-marinebacteriaadaptationconcerningchangingenvironmental conditions..............................................................................................................434
19.4.1Factorsaffectingbioremediationprocess................................................435
19.4.2Mechanismofremediationprocesses......................................................436
19.5 Heavymetalremovalbydeep-marinebacteria...................................................439
19.6 Applicationofdeep-marinebacteriainbioremediation......................................440
19.7 Bioremediationenhancementviageneticallymodifieddeep-marine bacteria..................................................................................................................441
19.7.1Nickel........................................................................................................443
19.7.2Cadmium..................................................................................................443
19.7.3Arsenic......................................................................................................443
19.7.4Mercury....................................................................................................444
19.8 Futureprospectivealsoprosandconsofusingdeep-marinebacteria................444
19.9 Conclusion............................................................................................................446
20.1 Introduction...........................................................................................................451
20.2 Biofilmsinbioremediation...................................................................................452
Contributors
ElijahAdegokeAdebayo
DepartmentofPureandAppliedBiology,MicrobiologyUnit,LadokeAkintola UniversityofTechnology,Ogbomoso,Oyo,Nigeria
KomalAgrawal
BioprocessandBioenergyLaboratory,DepartmentofMicrobiology,Central UniversityofRajasthan,Ajmer,Rajasthan,India
MichealBukolaAlao
DepartmentofPureandAppliedBiology,MicrobiologyUnit,LadokeAkintola UniversityofTechnology,Ogbomoso,Oyo,Nigeria
VanditaAnand
DepartmentofBiotechnology,MotilalNehruNationalInstituteofTechnology (MNNIT)Allahabad,Prayagraj,UttarPradesh,India
SomdiptaBagchi
SchoolofInfrastructure,IndianInstituteofTechnologyBhubaneswar, Bhubaneswar,Odisha,India
SanchayitaBasu
DepartmentofMicrobiology,TripuraUniversity(ACentralUniversity),Agartala, Tripura,India
PakizaBegum
DepartmentofChemistry,GargaonCollege,Gargaon,Assam,India
ManaswiniBehera
SchoolofInfrastructure,IndianInstituteofTechnologyBhubaneswar, Bhubaneswar,Odisha,India
NavneetaBharadvaja
DepartmentofBiotechnology,DelhiTechnologicalUniversity,Delhi,India
ArunimaBhattacharjee
DepartmentofMicrobiology,TripuraUniversity(ACentralUniversity),Agartala, Tripura,India
JoorieBhattacharya
GeneticGains,InternationalCropsResearchInstitutefortheSemi-AridTropics, Hyderabad,Telangana,India
GayatriBrahmandam
SreenidhiInstituteofScienceandTechnology,Hyderabad,Telangana,India
NikitaChakraborty
DepartmentofChemistry,IndianInstituteofTechnologyGuwahati,North Guwahati,Assam,India
SourishChakraborty
DepartmentofBiotechnology,HaldiaInstituteofTechnology(HIT),ICARE Complex,Haldia,WestBengal,India
DixitaChettri
DepartmentofMicrobiology,SikkimUniversity,Gangtok,Sikkim,India
MohitaChugh
DepartmentofBiotechnology,DelhiTechnologicalUniversity,Delhi,India
PraveenDahiya
AmityInstituteofBiotechnology,AmityUniversityUttarPradesh(AUUP),Noida, India
SubhasishDutta
DepartmentofBiotechnology,HaldiaInstituteofTechnology(HIT),ICARE Complex,Haldia,WestBengal,India;ChemicalEngineeringDivision,Centerof InnovativeandAppliedBioprocessing(CIAB),Mohali,Punjab,India
VivekKumarGaur
EnvironmentalBiotechnologyLaboratory,EnvironmentalToxicologyGroup,CSIRIndianInstituteofToxicologyResearch,Lucknow,UttarPradesh,India;Amity InstituteofBiotechnology,AmityUniversityUttarPradesh,LucknowCampus, Lucknow,UttarPradesh,India
DebojitGhosh
DepartmentofBiotechnology,HaldiaInstituteofTechnology(HIT),ICARE Complex,Haldia,WestBengal,India
MrinmoyGhosh
KIIT-TechnologyBusinessIncubator,KalingaInstituteofIndustrialTechnology University,Bhubaneswar,Orissa,India
SougataGhosh
DepartmentofMicrobiology,SchoolofScience,RKUniversity,Rajkot,Gujarat, India;DepartmentofChemicalEngineering,NortheasternUniversity,Boston, MA,UnitedStates
UmeshGoutam
DepartmentofGeneticsEngineeringandMolecularBiology,Schoolof BioengineeringandBiosciences,LovelyProfessionalUniversity,Phagwara, Punjab,India
KumariGuddi
NationalInstituteofTechnology,Rourkela,Odisha,India
RajaHusain
DepartmentofAgriculture,HimalayanUniversity,Itanagar,ArunachalPradesh, India;ICAR-IndianInstituteofPulsesResearch,Kanpur,UttarPradesh,India; DepartmentofPlantMolecularBiologyandGeneticEngineering,NarendraDeva UniversityofAgricultureandTechnology,Ayodhya,UttarPradesh,India
TouseefHussain
DepartmentofBotany,AligarhMuslimUniversity,Aligarh,UttarPradesh,India; DivisionofPlantPathology,ICAR-IndianAgriculturalResearchInstitute,New Delhi,Delhi,India
NelsonLibardiJunior
DepartamentodeEngenhariadeBioprocessoseBiotecnologia,Universidade FederaldoParana ´ UFPR,Curitiba,Parana,Brazil
SusanGraceKarp
DepartamentodeEngenhariadeBioprocessoseBiotecnologia,Universidade FederaldoParana ´ UFPR,Curitiba,Parana,Brazil
PriyaKhadgawat
DepartmentofGenetics,UniversityofDelhi,NewDelhi,Delhi,India
N.A.Khan
DepartmentofPlantMolecularBiologyandGeneticEngineering,NarendraDeva UniversityofAgricultureandTechnology,Ayodhya,UttarPradesh,India
AshutoshKumar
DepartmentofMicrobiology,TripuraUniversity(ACentralUniversity),Agartala, Tripura,India
DeepakKumar
DepartmentofManufacturing&Development,NextnodeBiosciencePvt.Ltd., Kadi,Gujarat,India;DepartmentofPlantMolecularBiologyandGenetic Engineering,NarendraDevaUniversityofAgricultureandTechnology,Ayodhya, UttarPradesh,India
LakhanKumar
DepartmentofBiotechnology,DelhiTechnologicalUniversity,Delhi,India
SayanLaha
DepartmentofBiotechnology,HaldiaInstituteofTechnology(HIT),ICARE Complex,Haldia,WestBengal,India
ArunimaLahiri
DepartmentofBiotechnology,HaldiaInstituteofTechnology(HIT),ICARE Complex,Haldia,WestBengal,India
NatesanManickam
EnvironmentalBiotechnologyLaboratory,EnvironmentalToxicologyGroup, CSIR-IndianInstituteofToxicologyResearch,Lucknow,UttarPradesh,India
SomaNag
DepartmentofChemicalEngineering,NationalInstituteofTechnologyAgartala, Tripura,India
RahulNitnavare
DivisionofPlantandCropSciences,SchoolofBiosciences,Universityof Nottingham,Nottingham,UnitedKingdom;DepartmentofPlantSciences, RothamstedResearch,Harpenden,UnitedKingdom
AnjanaPandey
DepartmentofBiotechnology,MotilalNehruNationalInstituteofTechnology (MNNIT)Allahabad,Prayagraj,UttarPradesh,India
SonikaPandey
ICAR-IndianInstituteofPulsesResearch,Kanpur,UttarPradesh,India
SoumyaPandit
DepartmentofLifeSciences,SchoolofBasicSciencesandResearch,Sharda University,GreaterNoida,UttarPradesh,India
BhismaKumarPatel
DepartmentofChemistry,IndianInstituteofTechnologyGuwahati,North Guwahati,Assam,India
MonikaPatel
CSIR-CentralDrugResearchInstitute,Sector-10JankipuramExtension, Lucknow,UttarPradesh,India
BhumikaRajoria
DepartmentofPharmacology,UniversityofMinnesota,Minneapolis,MN,United States
CristineRodrigues
DepartamentodeEngenhariadeBioprocessoseBiotecnologia,Universidade FederaldoParana ´ UFPR,Curitiba,Parana,Brazil
ArpitaRoy
DepartmentofBiotechnology,SchoolofEngineering&Technology,Sharda University,GreaterNoida,UttarPradesh,India
RahulSaha
DepartmentofChemicalEngineering,NationalInstituteofTechnologyAgartala, Tripura,India
AnganaSarkar
NationalInstituteofTechnology,Rourkela,Odisha,India
AveepsaSengupta
DepartmentofMicrobiology,TripuraUniversity(ACentralUniversity),Agartala, Tripura,India
BhaskarSharma
SchoolofLifeandEnvironmentalSciences,FacultyofScience,Engineering,and BuiltEnvironment,DeakinUniversity,Geelong,Australia;TERISchoolof AdvancedStudies,NewDelhi,Delhi,India
NahidMasoodSiddiqui
AmityInstituteofBiotechnology,AmityUniversityUttarPradesh(AUUP),Noida, India
NehaSingh
DepartmentofGeneticsEngineeringandMolecularBiology,Schoolof BioengineeringandBiosciences,LovelyProfessionalUniversity,Phagwara, Punjab,India
PragatiSingh
DepartmentofMicrobiology,TripuraUniversity(ACentralUniversity),Agartala, Tripura,India
JoyceGueirosWanderleySiqueira
DepartamentodeEngenhariadeBioprocessoseBiotecnologia,Universidade FederaldoParana ´ UFPR,Curitiba,Parana,Brazil
CarlosRicardoSoccol
DepartamentodeEngenhariadeBioprocessoseBiotecnologia,Universidade FederaldoParana ´ UFPR,Curitiba,Parana,Brazil
AbhinavSuresh
DepartmentofBiotechnology,RajalakshmiEngineeringCollege,Thandalam, TamilNadu,India
JollyThomas
CenterforNanosciencesandMolecularMedicine,AmritaInstituteofMedical SciencesandResearchCenter(AIMS),Kochi,Kerala,India
VarshaTripathi
EnvironmentalBiotechnologyLaboratory,EnvironmentalToxicologyGroup, CSIR-IndianInstituteofToxicologyResearch,Lucknow,UttarPradesh,India; AcademyofScientificandInnovativeResearch(AcSIR),Ghaziabad,Uttar Pradesh,India
KimKleyValladares-Diestra
DepartamentodeEngenhariadeBioprocessoseBiotecnologia,Universidade FederaldoParana ´ UFPR,Curitiba,Parana,Brazil
LucianaPortodeSouzaVandenberghe
DepartamentodeEngenhariadeBioprocessoseBiotecnologia,Universidade FederaldoParana ´ UFPR,Curitiba,Parana,Brazil
AnilKumarVerma
DepartmentofMicrobiology,SikkimUniversity,Gangtok,Sikkim,India
PradeepVerma
BioprocessandBioenergyLaboratory,DepartmentofMicrobiology,Central UniversityofRajasthan,Ajmer,Rajasthan,India
NitinVikram
DepartmentofAgriculture,ZilaParishadAgricultureCollege,Banda,Uttar Pradesh,India
ThomasJ.Webster
DepartmentofChemicalEngineering,NortheasternUniversity,Boston,MA, UnitedStates
GarimaYadav
ICAR-IndianInstituteofPulsesResearch,Kanpur,UttarPradesh,India; DepartmentofPlantMolecularBiologyandGeneticEngineering,NarendraDeva UniversityofAgricultureandTechnology,Ayodhya,UttarPradesh,India