BiocontrolAgentsandSecondary Metabolites
BiocontrolAgentsand SecondaryMetabolites
ApplicationsandImmunizationfor PlantGrowthandProtection
Editedby
SudishaJogaiah
LaboratoryofPlantHealthcareandDiagnostics, P.G.DepartmentofBiotechnologyand Microbiology,KarnatakUniversity,Dharwad, Karnataka,India
WoodheadPublishingisanimprintofElsevier
TheOfficers’ MessBusinessCentre,RoystonRoad,Duxford,CB224QH,UnitedKingdom 50HampshireStreet,5thFloor,Cambridge,MA02139,UnitedStates TheBoulevard,LangfordLane,Kidlington,OX51GB,UnitedKingdom ©2021ElsevierInc.Allrightsreserved.
Nopartofthispublicationmaybereproducedortransmittedinanyformorbyanymeans,electronic ormechanical,includingphotocopying,recording,oranyinformationstorageandretrievalsystem,without permissioninwritingfromthepublisher.Detailsonhowtoseekpermission,furtherinformationabout thePublisher’spermissionspoliciesandourarrangementswithorganizationssuchastheCopyright ClearanceCenterandtheCopyrightLicensingAgency,canbefoundatourwebsite:www.elsevier.com/ permissions.
ThisbookandtheindividualcontributionscontainedinitareprotectedundercopyrightbythePublisher (otherthanasmaybenotedherein).
Notices
Knowledgeandbestpracticeinthisfieldareconstantlychanging.Asnewresearchandexperiencebroaden ourunderstanding,changesinresearchmethods,professionalpractices,ormedicaltreatmentmaybecome necessary.
Practitionersandresearchersmustalwaysrelyontheirownexperienceandknowledgeinevaluatingand usinganyinformation,methods,compounds,orexperimentsdescribedherein.Inusingsuchinformation ormethodstheyshouldbemindfuloftheirownsafetyandthesafetyofothers,includingpartiesforwhom theyhaveaprofessionalresponsibility.
Tothefullestextentofthelaw,neitherthePublishernortheauthors,contributors,oreditors,assumeany liabilityforanyinjuryand/ordamagetopersonsorpropertyasamatterofproductsliability,negligenceor otherwise,orfromanyuseoroperationofanymethods,products,instructions,orideascontainedinthe materialherein.
LibraryofCongressCataloging-in-PublicationData
AcatalogrecordforthisbookisavailablefromtheLibraryofCongress
BritishLibraryCataloguing-in-PublicationData
AcataloguerecordforthisbookisavailablefromtheBritishLibrary
ISBN:978-0-12-822919-4
ISBN:978-0-12-823094-7
ForinformationonallWoodheadpublications visitourwebsiteat https://www.elsevier.com/books-and-journals
Publisher: CharlotteCockle
AcquisitionsEditor: NancyMaragioglio
EditorialProjectManager: AliceGrant
ProductionProjectManager: SuryaNarayanan
Jayachandran
CoverDesigner: MilesHitchen
TypesetbySPiGlobal,India
2.4Roleofmicroorganismsinpotassiumsolubilityanduptake
2.5Roleofpotassiumsolubilizingfungiasbiofertilizer
2.6Roleofpotassiumsolubilizingfungiasbiopesticide/biocontrol agent
3Trichoderma-plant-pathogeninteractionsforbenefitofagriculture andenvironment41
NarendraKumarandS.M.PaulKhurana
3.4Inducedresistanceagainstbioticandabioticstresses
3.5 Trichoderma-pathogeninteractions
3.6Thethree-wayinteraction: Trichoderma-plant-pathogen
4 Trichoderma:Fromgenetofield65 B.NandiniandN.Geetha
4.2 Trichoderma-mediatedgenesandelicitors-induceddisease resistanceinplanthostsystem
4.3 Trichoderma-basedbiocontrolformulations
4.4 Trichoderma-basedeffectormolecules:Amodelsystemtodesign specificbioformulations
4.5 Trichoderma effectorproteins 74
4.6 Trichoderma secondarymetabolites(SMs)—Neweffectorsinplant interactions 75
4.7Plantgrowthregulators(PGRs)
4.8Nanotechnology-based Trichoderma formulation:Futuretrendsfor thebiologicalcontrolofplantdiseases
4.9Innovativetechnologybeyondtheordinarywithsyntheticbiology interventions: Trichoderma proteomicsandmetabolomics
5Potentialof Trichoderma speciesinalleviatingtheadverseeffectsof bioticandabioticstressesinplants85 ManzoorR.Khan,GhazalaParveen,AbbuZaid,ShabirHussainWani, andSudishaJogaiah
5.3Roleof
5.4Roleof
6Beneficialplant-associatedbacteriamodulatehosthormonalsystem enhancingplantresistancetowardabioticstress113 P.Hariprasad,H.G.Gowtham,andC.Gourav 6.1Introduction
6.3Abscisicacid(ABA)
6.4Ethylene(ET)
6.8Strigolactones(SLs)
6.9Salicylicacid(SA)
6.10Jasmonicacid(JA)
6.11Otherhormones
7Biocontrolpotentialofplantgrowth-promotingrhizobacteria (PGPR)against Ralstoniasolanacearum:Currentandfuture prospects153 K.NarasimhaMurthy,K.Soumya,A.C.Udayashankar,C.Srinivas, andSudishaJogaiah
7.2Mechanismsofplantgrowth-promotingrhizobacteriaagainst Ralstoniasolanacearum
8Seedbiopriminganovelmethodtocontrolseedbornediseases ofcrops181
MonikaSood,VipulKumar,andRubyRawal 8.1Introduction
8.4Theprocedureofseedbiopriming
8.5Mechanismofactionofseedbioprimingbybioagents
8.6Conclusionandfutureperspective
9Metabolomicprofilemodificationandenhanceddisease resistancederivedfromaliengenesintrogressioninplants225
VuQuynhHoa,TranThiMinhHang,andVuHaiYen 9.1Introduction
9.4Activemetabolitesasbiomarkersfordiseaseresistance inplantbreeding
10Currenttrendandfutureprospectsofsecondarymetabolite-based productsfromagriculturallyimportantmicroorganisms239
RichaSalwanandVivekSharma
11Antimicrobialsecondarymetabolitesfrom Trichoderma spp.asnext generationfungicides257
S.Nakkeeran,S.Rajamanickam,M.Karthikeyan,K.Mahendra, P.Renukadevi,andI.Johnson
Trichoderma CWDEandMAMPmoleculesonimproving planthealth
AnkitKumarGhorai,RakeshPatsa,SubhenduJash, andSubrataDutta
13Signaturesofsignalingpathwaysunderlyingplant-growth promotionbyfungi321
14OverproductionofROS:underlyingmolecularmechanismof scavengingandredoxsignaling347
MuhammadSalmanHaider,MuhammadJafarJaskani, andJingguiFang
15Antioxidant-mediateddefenseintriggeringresistanceagainst bioticstressinplants383
BelurSatyanKumudiniandSavitaVeeranagoudaPatil
16Roleofterpenesinplantdefensetobioticstress401
SilviaLauraToffolatti,GiulianaMaddalena,AlessandroPassera, PaolaCasati,PieroAttilioBianco,andFabioQuaglino
17Roleofphenolsandpolyphenolsinplantdefenseresponse tobioticandabioticstresses419 PalisthaTuladhar,SantanuSasidharan,andPrakashSaudagar
18Terpenoidindolealkaloids,asecondarymetaboliteinplant defenseresponse443
M.Thippeswamy,V.Rajasreelatha,RajuKrishnaChalannavar, andSudishaJogaiah
21Explorationsoffungaldiversityinextremeenvironmental conditionsforsustainableagricultureapplications483 H.V.Pavan,S.MahadevaMurthy,andSudishaJogaiah
22Diversityandfunctionsofsecondarymetabolitessecretedby epi-endophyticmicrobesandtheirinteractionwith phytopathogens495
G.Karthikeyan,L.Rajendran,V.Sendhilvel,K.Prabakar, andT.Raguchander
22.1Introduction
22.2Biocontrolagents(BCAs)
22.3Epi/endophytes
22.4Secondarymetabolites
23Fungaldiversityanditsroleinsustainableagriculture519 KushalRaj,LeelaWati,andAnilKumar
24Exploringthebiogeographicaldiversityof Trichoderma forplant health537
S.Nakkeeran,T.Marimuthu,P.Renukadevi,S.Brindhadevi, andSudishaJogaiah
24.1Introduction
24.9Factorsinfluencingbioefficacyof Trichoderma inmaintaining
24.10Modeofaction
25Pathogenesis-relatedproteins:Roleinplantdefense573 VeenuJoshi,NeeluJoshi,AmberVyas,andS.K.Jadhav 25.1Introduction
26Differentmechanisms ofsignalingpathwaysforplantprotection fromdiseasesbyfungi591 SwapanKumarGhoshandAtanuPanja
26.4ElicitorsproducedbyFBCA
26.5TransgenicapproachforplantprotectionusingBCA
26.6Siderophoreinplantimmunedefenseresponse
26.8Inductionofplantresistance/plantprotectionmechanismsby mycorrhizalfungi–plantinteraction
26.9Chemicalinteractionofthemycorrhizalfungiwiththe host
26.10Genesandsignalingpathwayinvolvedintheinductionof resistanceofhostbymycorrhizalfungi
26.11YeastsasBCA,inductionofdiseaseresistancesignaling pathwaysinhostplant
26.12Thethree-waytalk/interactionanalysis: Trichoderma-plantpathogen
27Ecologicalstudiesoffungalbiodiversityinfreshwaterandtheir broad-spectrumapplications631
K.S.Divya,S.MahadevaMurthy,andSudishaJogaiah
27.1Introduction
28CRISPR/Cassystem:Apowerfulapproachforenhancedresistance againstriceblast649
MuntazirMushtaq,HilalAhmadPir,AbbuZaid,and ShabirHussainWani
28.1Introduction
28.2Concept-proofdemonstrationofCRISPR/Cassystemin
28.3EngineeringriceblastresistancethroughCRISPRtool-kit
28.4Perspectivesforgenome-editedblast-resistantrice
29Regulatoryrequirementforcommercializationofbiocontrol agents659
A.B.Vedamurthy,S.L.Varsha,andS.D.Shruthi
29.1Introduction
29.2Biocontrolagents
29.3Regulatoryrequirements:Indianandglobalperspective 667
29.4Summaryandconclusion
Contributors
K.N.Basavesha DepartmentofAgriculturalMicrobiology,CollegeofAgriculture, UniversityofAgriculturalSciences,Dharwad,Karnataka,India
S.A.Belorkar DepartmentofMicrobiologyandBioinformatics,AtalBihari VajpayeeUniversity,Bilaspur,India
PieroAttilioBianco DepartmentofAgriculturalandEnvironmentalSciences— Production,Landscape,Agroenergy(DISAA),UniversityofMilan,Milano,Italy
S.Brindhadevi DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,India
PaolaCasati DepartmentofAgriculturalandEnvironmentalSciences—Production, Landscape,Agroenergy(DISAA),UniversityofMilan,Milano,Italy
RajuKrishnaChalannavar DepartmentofAppliedBotany,MangaloreUniversity, Mangalagangotri,Karnataka,India
JishuangChen BioresourceInstituteforHealthyUtilizationandKeyLaboratoryof BasicPharmacologyandJointInternationalResearchLaboratoryofEthnomedicine ofMinistryofEducation,ZunyiMedicalUniversity,Zunyi;CollegeofBiotechnology andPharmaceuticalEngineering,NanjingTechUniversity,Nanjing,China
K.S.Divya DepartmentofMicrobiology,Yuvaraja’sCollege,UniversityofMysore, Mysore,Karnataka,India
SubrataDutta DepartmentofPlantPathology,BidhanChandraKrishi Viswavidyalaya,Mohanpur,Nadia,WestBengal,India
JingguiFang CollegeofHorticulture,NanjingAgriculturalUniversity,Nanjing, P.R.China
N.Geetha NanobiotechnologyLaboratory,DOSinBiotechnology,Universityof Mysore,Mysore,Karnataka,India
AnkitKumarGhorai DepartmentofPlantPathology,BidhanChandraKrishi Viswavidyalaya,Mohanpur,Nadia,WestBengal,India
SwapanKumarGhosh MolecularMycopathologyLaboratory,BiocontrolUnit,PG DepartmentofBotany,RamakrishnaMissionVivekanandaCentenaryCollege (Autonomous),Kolkata,India
C.Gourav CentreforRuralDevelopmentandTechnology,IndianInstituteof TechnologyDelhi,NewDelhi,India
H.G.Gowtham CentreforRuralDevelopmentandTechnology,IndianInstituteof TechnologyDelhi,NewDelhi,India
MuhammadSalmanHaider CollegeofHorticulture,NanjingAgricultural University,Nanjing,P.R.China
TranThiMinhHang DepartmentofHorticultureandLandscaping,Facultyof Agronomy,VietnamNationalUniversityofAgriculture,Hanoi,Vietnam
P.Hariprasad CentreforRuralDevelopmentandTechnology,IndianInstituteof TechnologyDelhi,NewDelhi,India
VuQuynhHoa DepartmentofHorticultureandLandscaping,FacultyofAgronomy, VietnamNationalUniversityofAgriculture,Hanoi,Vietnam
S.K.Jadhav SchoolofStudiesinBiotechnology,Pt.RavishankarShuklaUniversity, Raipur,Chhattisgarh,India
ArchanaJain BioresourceInstituteforHealthyUtilizationandKeyLaboratoryof BasicPharmacologyandJointInternationalResearchLaboratoryofEthnomedicine ofMinistryofEducation,ZunyiMedicalUniversity,Zunyi,China;Departmentof Microbiology,SriSatyaSaiUniversityofTechnologyandMedicalSciences,Sehore, MadhyaPradesh,India
SubhenduJash DepartmentofPlantPathology,BidhanChandraKrishi Viswavidyalaya,Mohanpur,Nadia,WestBengal,India
MuhammadJafarJaskani InstituteofHorticulturalSciences,Universityof Agriculture,Faisalabad,Pakistan
SudishaJogaiah LaboratoryofPlantHealthcareandDiagnostics,P.G.Departmentof BiotechnologyandMicrobiology,KarnatakUniversity,Dharwad,Karnataka,India
I.Johnson DepartmentofPlantPathology,CentreforPlantProtectionStudies,Tamil NaduAgriculturalUniversity,Coimbatore,India
NeeluJoshi SchoolofBiotechnology&Bioinformatics,D.Y.PatilDeemedToBe University,NaviMumbai,Maharashtra,India
VeenuJoshi CenterforBasicSciences,Pt.RavishankarShuklaUniversity,Raipur, Chhattisgarh,India
G.Karthikeyan DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,TamilNadu,India
M.Karthikeyan DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,India
ManzoorR.Khan SectionofPlantPathology,DepartmentofBotany,Aligarh MuslimUniversity,Aligarh,UttarPradesh,India
S.M.PaulKhurana AmityInstituteofBiotechnology,AmityUniversityHaryana, Gurgaon,India
AnilKumar DepartmentofPlantPathology,CCSHAU,Hisar,Haryana,India
NarendraKumar AmityInstituteofBiotechnology,AmityUniversityHaryana, Gurgaon,India
VipulKumar SchoolofAgriculture,LovelyProfessionalUniversity,Phagwara, Punjab,India
BelurSatyanKumudini DepartmentofBiotechnology,SchoolofSciences(Block1), JAIN(Deemed-to-beUniversity),Bengaluru,Karnataka,India
MahanteshKurjogi GreenNanotechnologyLaboratory,UniversityofAgricultural Sciences,Dharwad,Karnataka,India
GiulianaMaddalena DepartmentofAgriculturalandEnvironmentalSciences— Production,Landscape,Agroenergy(DISAA),UniversityofMilan,Milano,Italy
K.Mahendra DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,India
T.Marimuthu WorldNoniResearchCentre,Chennai,India
S.MahadevaMurthy DepartmentofMicrobiology,Yuvaraja’sCollege,University ofMysore,Mysore,Karnataka,India
MuntazirMushtaq SchoolofBiotechnology,Sher-e-KashmirUniversityof AgriculturalSciencesandTechnologyofJammu,Jammu,JammuandKashmir,India
S.Nakkeeran DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,India
B.Nandini NanobiotechnologyLaboratory,DOSinBiotechnology,Universityof Mysore,Mysore,Karnataka,India
K.NarasimhaMurthy DepartmentofStudiesinBiotechnology,Universityof Mysore,Mysore,Karnataka,India
AtanuPanja MolecularMycopathologyLaboratory,BiocontrolUnit,PG DepartmentofBotany,RamakrishnaMissionVivekanandaCentenaryCollege (Autonomous),Kolkata,India
GhazalaParveen SectionofPlantPathology,DepartmentofBotany,AligarhMuslim University,Aligarh,UttarPradesh,India
AlessandroPassera DepartmentofAgriculturalandEnvironmentalSciences— Production,Landscape,Agroenergy(DISAA),UniversityofMilan,Milano,Italy
SavitaVeeranagoudaPatil DepartmentofBiotechnology,SchoolofSciences (Block1),JAIN(Deemed-to-beUniversity),Bengaluru,Karnataka,India
RakeshPatsa DepartmentofPlantPathology,BidhanChandraKrishi Viswavidyalaya,Mohanpur,Nadia,WestBengal,India
H.V.Pavan DepartmentofMicrobiology,Yuvaraja’sCollege,UniversityofMysore, Mysore,Karnataka,India
HilalAhmadPir DivisionofPlantBreedingandGenetics,Sher-e-Kashmir UniversityofAgriculturalSciencesandTechnologyofJammu,Jammu,Jammuand Kashmir,India
K.Prabakar DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,TamilNadu,India
FabioQuaglino DepartmentofAgriculturalandEnvironmentalSciences— Production,Landscape,Agroenergy(DISAA),UniversityofMilan,Milano,Italy
T.Raguchander DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,TamilNadu,India
KushalRaj DepartmentofPlantPathology,CCSHAU,Hisar,Haryana,India
S.Rajamanickam DepartmentofPlantPathology,CentreforPlantProtection Studies,TamilNaduAgriculturalUniversity,Coimbatore,India
V.Rajasreelatha DepartmentofBiochemistry,IndianInstituteofScience, Bangalore,Karnataka,India
L.Rajendran DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,TamilNadu,India
YounesM.Rashad PlantProtectionandBiomolecularDiagnosisDepartment,Arid LandsCultivationResearchInstitute,CityofScientificResearchandTechnological Applications,Alexandria,Egypt
RubyRawal KurukshetraUniversityKurukshetra(KUK),Thanesar,Haryana,India
P.Renukadevi DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,India
RichaSalwan CollegeofHorticultureandForestry,DrYSParmarUniversityof Horticulture&Forestry,Hamirpur,HimachalPradesh,India
SurendraSarsaiya BioresourceInstituteforHealthyUtilizationandKeyLaboratory ofBasicPharmacologyandJointInternationalResearchLaboratoryof EthnomedicineofMinistryofEducation,ZunyiMedicalUniversity,Zunyi,China; DepartmentofMicrobiology,SriSatyaSaiUniversityofTechnologyandMedical Sciences,Sehore,MadhyaPradesh,India
SantanuSasidharan DepartmentofBiotechnology,NationalInstituteof Technology,Warangal,Telangana,India
PrakashSaudagar DepartmentofBiotechnology,NationalInstituteofTechnology, Warangal,Telangana,India
V.P.Savalgi DepartmentofAgriculturalMicrobiology,CollegeofAgriculture, UniversityofAgriculturalSciences,Dharwad,Karnataka,India
V.Sendhilvel DepartmentofPlantPathology,CentreforPlantProtectionStudies, TamilNaduAgriculturalUniversity,Coimbatore,TamilNadu,India
VivekSharma UniversityCentreforResearchandDevelopment,Chandigarh University,Mohali,Punjab,India
JingshanShi BioresourceInstituteforHealthyUtilizationandKeyLaboratoryof BasicPharmacologyandJointInternationalResearchLaboratoryofEthnomedicine ofMinistryofEducation,ZunyiMedicalUniversity,Zunyi,China
S.D.Shruthi MicrobiologyandMolecularBiologyLab,BioEdgeSolutions, Bangalore,Karnataka,India
MonikaSood SchoolofBioengineeringandBiosciences,LovelyProfessional University,Phagwara,Punjab,India
K.Soumya FieldMarshalKMCariappaCollege,ConstituentCollegeofMangalore University,Madikeri,Karnataka,India
C.Srinivas DepartmentofMicrobiologyandBiotechnology,JnanabharathiCampus, BangaloreUniversity,Bangalore,Karnataka,India
M.Thippeswamy DepartmentofBotany,DavangereUniversity,Davanagere, Karnataka,India
SilviaLauraToffolatti DepartmentofAgriculturalandEnvironmentalSciences— Production,Landscape,Agroenergy(DISAA),UniversityofMilan,Milano,Italy
PalisthaTuladhar DepartmentofBiotechnology,NationalInstituteofTechnology, Warangal,Telangana,India
A.C.Udayashankar DepartmentofStudiesinBiotechnology,UniversityofMysore, Mysore,Karnataka,India
S.L.Varsha P.G.DepartmentofStudiesinMicrobiologyandBiotechnology, KarnatakUniversity,Dharwad,Karnataka,India
A.B.Vedamurthy P.G.DepartmentofStudiesinMicrobiologyandBiotechnology, KarnatakUniversity,Dharwad,Karnataka,India
AmberVyas UniversityInstituteofPharmacy,Pt.RavishankarShuklaUniversity, Raipur,Chhattisgarh,India
ShabirHussainWani MountainResearchCentreforFieldCrops,Sher-e-Kashmir UniversityofAgriculturalSciencesandTechnologyofKashmir,Khudwani Anantnag,JammuandKashmir,India
LeelaWati DepartmentofMicrobiology,CCSHAU,Hisar,Haryana,India
VuHaiYen GraduateSchoolofMedicalSciences,KyushuUniversity,Fukuoka, Japan
AbbuZaid PlantPhysiologyandBiochemistrySection,DepartmentofBotany, AligarhMuslimUniversity,Aligarh,UttarPradesh,India