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and Information Theory Evolution

Third Edition

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and Information Theory Evolution

Third Edition

John Scales Avery University of Copenhagen, Denmark

Published by

World Scientific Publishing Co. Pte. Ltd.

5 Toh Tuck Link, Singapore 596224

USA office: 27 Warren Street, Suite 401-402, Hackensack, NJ 07601

UK office: 57 Shelton Street, Covent Garden, London WC2H 9HE

Library of Congress Cataloging-in-Publication Data

Names: Avery, John, 1933– author.

Title: Information theory and evolution / John Scales Avery, University of Copenhagen, Denmark.

Description: Third edition. | New Jersey : World Scientific, [2022] | Includes bibliographical references and index.

Identifiers: LCCN 2021047916 | ISBN 9789811250361 (hardback) | ISBN 9789811253096 (paperback) | ISBN 9789811250378 (ebook) | ISBN 9789811250385 (mobi)

Subjects: LCSH: Biometry--Data processing. | Evolution (Biology)--Statistical methods--Data processing.

Classification: LCC QH323.5 .A94 2022 | DDC 577.072/7--dc23

LC record available at https://lccn.loc.gov/2021047916

British Library Cataloguing-in-Publication Data

A catalogue record for this book is available from the British Library.

Copyright © 2022 by World Scientific Publishing Co. Pte. Ltd.

All rights reserved. This book, or parts thereof, may not be reproduced in any form or by any means, electronic or mechanical, including photocopying, recording or any information storage and retrieval system now known or to be invented, without written permission from the publisher.

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Printed in Singapore

AppendixAENTROPYANDINFORMATION267

AppendixBBIOSEMIOTICS273

AppendixCENTROPYANDECONOMICS279

Index 299

Preface

Theaimofthisbookistodiscussthephenomenonoflife,includingits originandevolution(andalsoincludinghumanculturalevolution)against thebackgroundofthermodynamics,statisticalmechanicsandinformation theory.Thesecondlawofthermodynamicsstatesthattheentropy(disorder)oftheuniversealwaysincreases.Theseemingcontradictionbetween thesecondlawofthermodynamicsandthehighdegreeoforderandcomplexityproducedbylivingorganismswillbeacentralthemeofthebook. Thisapparentcontradictionhasitsresolutionintheinformationcontent oftheGibbsfreeenergywhichisconstantlyenteringthebiospherefrom outsidesources,aswillbediscussedindetailinChapter4.

Thebookbeginswithasketchofthehistoryofevolutionarythought andresearchnotonlyduringCharlesDarwin’slifetime,butalsobeforeand afterhim.Amongthepioneersofevolutionwhoseworkwillbediscussed areAristotle,Condorcet,Linnaeus,ErasmusDarwin,Lamarck,andLyell. TheylaidthefoundationsuponwhichCharlesDarwinbuilthistheory.

AfterCharlesDarwin’sdeathin1882,thetheoryofevolutioncontinuedtodevelopandcontinuedtobestrengthenedbynewlydiscoveredfacts. ModernmolecularbiologyandDNAtechnologyhaveallowedustoconstructevolutionaryfamilytreesinafarmoreprecisewaythanDarwinand hiscontemporariescoulddoonthebasisofmorphology.Datafromcomparativesequencingofmacromoleculeshave,onthewhole,confirmedthe19th centurypictureofevolution;buttheyhavealsosuppliedmuchknowledge whichwasnotavailabletotheearlypioneersofevolutionarytheory.

Darwinvisualizedevolutionastakingplacethroughnaturalselection actingonsmallinheritablevariationsintheindividualsofaspecies;butwe nowknowthatvariationscansometimesbesuddenandlarge—through mutationsofthetypestudiedbydeVriesandMuller,orthroughthestill moredrasticmechanismofsymbiosisandgeneticfusion.

Darwinspeculatedontheoriginoflife,buthedeliberatelyomitted discussionofthissubjectfromhispublications.However,inthelastletter whichheisknowntohavedictatedandsigned,hewrote:“...theprinciple oflifewillhereafterbeshowntobeapartorconsequenceofsomegeneral law.”Inourowntime,researcherssuchasA.I.Oparin,HeraldUrey,Stanley Miller,MelvinCalvin.SydneyFox,LeslieOrgel,CarlSagan,Manfred Eigen,ChristiandeDuve,ErwinSchr¨odinger,ClaudeShannon,andStuart Kaufmanhavebeguntouncoverthisgenerallaw.

Inthepicturethathasbeguntoemergefromtheworkoftheseresearchers,theearthoriginallyhadanatmospherefromwhichmolecular oxygenwasalmostentirelyabsent.Energysources,suchasunderseahydrothermalvents,ultravioletlight,volcanism,radioactivedecay,lightning flashes,andmeteoricimpacts,convertedthemoleculesoftheearth’sprimitiveoceanandatmosphereintoaminoacids,nucleotides,andotherbuilding blocksoflivingorganisms.Energy-richmolecules,suchasH2S,FeS,H2, phosphateesters,pyrophosphates,thioestersandHCNwerealsoproduced. Sincenolivingorganismswerepresent,andsincemolecularoxygenwas absentfromtheearlyatmosphere,theenergy-richmoleculeswerenotdegradedimmediately,andtheywerepresentinmoderateconcentrationsin theprimitiveocean.

Onethenvisualizesaneraof“chemicalDarwinism”,inwhichautocatalyticsystemscompetedforthesupplyofprecursorsandenergy-rich molecules.Theseautocatalyticsystems(i.e.systemsofmoleculeswhich catalysedthesynthesisofthemselves)canbethoughtofastheprecursorsoflife.Theynotonly“ate”theenergy-richmoleculespresentinthe earlyocean;theyalsoreproduced;andtheycompetedwitheachotherin acompletelyDarwinianway,randomvariationsinthedirectionofgreater efficiencybeingselectedandpropagated.

Anextremelyinterestingaspectofthepicturejustdiscussedisthespecialroleoftheenergy-richmolecules.Theyplayaspecialrolebecause theprocessofmolecularDarwinismatfirstsightseemstobeviolatingthe secondlawofthermodynamics—creatingorderoutofdisorder,whenaccordingtothesecondlaw,disorderoughttobecontinuallyincreasing.If wereflectfurtheralongtheselines,allformsoflifeseematfirstsighttobe creatingorderoutofdisorder,inviolationofthesecondlaw.

Livingorganismsareabletodothisbecausetheyarenotclosedsystems. Ifwelookatthe“fineprint”ofthesecondlawofthermodynamics,itsays thattheentropy(ordisorder)oftheuniversealwaysincreases—andof courseitdoes.Livingorganismsproduceorderwithinthemselvesandtheir

immediateenvironmentsbycreatingdisorderintheuniverseasawhole. Thedegradationoffoodintowasteproductsis,infact,theprocessthrough whichlifecreateslocalorderattheexpenseofglobaldisorder.Lifebuilds amazingdisplaysoflocalorder;butmeanwhile,thedisorderofthelarger systemincreases.Thelargersystemincludesthesun,theearth,andthe colddustcloudsofinterstellarspace.

Inthehypotheticalpictureoftheoriginoflifepresentedabove,the “food”moleculesaredegradedbytheautocatalystsintheprocessofordercreatingmolecularevolution.InChapter4ofthepresentbook,wewill focusontheentropyrelationshipsinthisprocess.ThestatisticalmechanicsofMaxwell,BoltzmannandGibbswillbecomparedwithinformation theory,asdevelopedbyClaudeShannonandothers.Itwillbeshownthat Gibbsfreeenergycarriesacontentofinformationandthatthe“thermodynamicinformation”obtainedbytheautocatalystsfromthefree-energy-rich moleculesintheprimitiveoceanwasthesourceoftheorderwhichdevelopedduringtheprocessofchemicalevolution.

Today,theearth’sgreatestsourceofthermodynamicinformationisthe floodoffreeenergywhichreachesusintheformofphotonsfromthesun.In Chapter4,aquantitativerelationshipwillbederivedconnectingtheenergy ofanabsorbedphotonanditsinformationcontent.Readerswhowishto skipthemathematicsinChapter4maydosowithoutlosingthethreadof theargument,providedthattheyarewillingtoacceptonfaiththemain resultofthederivations—thefactthatGibbsfreeenergycontainsthe thermodynamicformofinformation.

Itseemsprobablethatthermodynamicinformationderivedfromfree energywasthedrivingforcebehindtheoriginoflife.Itistodaythedriving forcebehindallformsoflife—behindthelocalorderwhichlifeisableto produce.Thisisthe“generallaw”whichDarwinguessedmightsomeday beshowntounderlietheprincipleoflife.Alloftheinformationcontained inthecomplex,beautiful,andstatisticallyunlikelystructureswhichareso characteristicoflivingorganismscanbeseenashavingbeendistilledfrom theenormousfloodofthermodynamicinformationwhichreachestheearth intheformofsunlight.

Wheredohumansfitintothispicture?Likeallotherformsoflifeon Earth,humanspassinformationfromonegenerationtothenext,coded intothebasesequencesoftheirDNA.However,humanshavedevelopeda second,highlyeffectivemodeofinformationtransmission—languageand culture.

Althoughlanguageandculturearenotuniquetoourspecies,theextent towhichtheyaredevelopedisuniqueonEarth.Thushumansaredistinguishedfromotherspeciesbyhavingtwomodesofevolutionarychange— geneticevolution,symbolizedbythelonginformation-containingDNA molecule,andculturalevolution,whichmightbesymbolizedbyabook oracomputerdiskette.

Ifwecomparethesetwomodesofevolution,wecanseethatgenetic evolutionisveryslow,whileculturalevolutionisextremelyrapid—and accelerating.Thehumangenomehaschangedverylittleduringthelast 40,000years;butduringthisperiod,culturalevolutionhasalteredourway oflifebeyondrecognition.Thereforehumannature,formedtofittheway oflifeofourhunter-gathererancestors,isnotentirelyappropriateforour presentwayoflife.Forexample,humannatureseemstocontainanelement ofwhatmightbecalled“tribalism”,whichdoesnotfitwellwiththemodern world’sinstantaneouscommunicationsandincreasinginterdependence.

Notonlydoesthegeneticevolutionofhumanslagbehindtheircultural evolution,butalsoculturalevolutionitselfhasarapidly-movingcomponentandaslowly-movingcomponentwhichlagsbehind,creatingtensions. Asweenterthe21stcentury,technologyisdevelopingwithphenomenal speed,whilesocialandpoliticalinstitutionschangefarmoreslowly.The disharmonythuscreatedrequiresstudyandthoughtifhumansocietyis nottobeshakentopiecesbytherapidityofscientificprogress.

Interestingly,informationtechnologyandbiotechnology,thetwomost rapidlydevelopingfields,arebecomingincreasinglylinked,eachfinding inspirationintheother.Biologistshavestudiedthemechanismofselfassemblyofsupramolecularstructuressuchascellmembranes,viruses, chloroplastsandmitochondria.Researchersinthefieldofnanoscienceare nowattemptingtousethisprincipleofsupramolecularorganization,observedinbiology,toreachanewdegreeofminiaturizationfortheswitches andmemorydevicesofinformationtechnology.Simulatedevolution,modelledafterbiologicalevolution,hasbeenusedtodevelopnewandunorthodoxcomputerhardwareandsoftware.Meanwhile,computersandautomationarebecomingmoreandmoreessentialtobiotechnology;andinfact manyuniversitiesnowhavedepartmentsdevotedtobioinformatics.Chapter7willtracethehistoryofinformationtechnology,whileChapter11will discussthewaysinwhichitismergingwithbiotechnology.

Thefinalchapterofthebooklooksatthefuturechallengesthathumanitywillfaceasaresultofscientiificandtechnicalprogress,combined witharapidlygrowingpopulation,andanincresingecologicalfootprint.

Acknowledgements

IamextremelygratefultoProfessorLawrenceS.Lerner,Dr.CindyLerner, ProfessorDudleyR.Herschbach,Dr.AnitaGoel,Dr.LuisEmilioBruni, andtomyson,JamesAveryfortheirgenerousadviceandhelp.ThecontributionsoftheLernershavebeenespeciallygreat.Theircarefulreading oftheentiremanuscriptandtheirmanydetailedsuggestionshavebeeninvaluable.MysonJamesreadseveralversionsofChapter4,andhisadvice wasagreathelpinwritingthefinalversionofthiscentralchapter.Healso helpedmetoimproveChapters7and8.Afewsectionsofthisbookare basedonnotesforacourseonScienceandSocietywhichIhavetaughtat theUniversityofCopenhagensince1989.Othersectionsdrawinspiration fromacourseonStatisticalMechanics,seenfromthestand-pointofinformationtheory,whichIhelpedtoteachsomeyearsearlier.TheStatistical MechanicscoursewasplannedbyAssociateProfessorKnudAndersen.I amalsogratefultoProfessorAlbertSzent-Gy¨orgyi,oneofthemostimportantpioneersofBioenergetics,formanyinspiringconversationsduringthe yearswhenIworkedinhislaboratoryatWoodsHole.FinallyIwouldlike tothankMr.HenningVibæk,whodrewthefigures.

Introductiontothethirdedition

IamgratefultotheWorldScientificPublishingCompanyforaskingmeto prepareathirdeditionofthisbook.Thishasallowedmetomakesome additionswhichIhopereaderswillenjoy:

ManyadditionshavebeenmadetoChapter7, InformationTechnology. Ihopethattheseadditionsreflecttherapidandconstantlyaccelerating progressbeingmadeinthisfield.withsuchnewdevelopmentsasWikipedia andeffectivesearchengines,suchasGoogle.

Achapterentitled Pathfinding hasbeenadded.Thischapterdiscusses thediscoveriesofthethreewinnersofthe2014NobelPrizeinPhysiologyor Medicine,ProfessorsJohnO’Keefe,May-BrittMoserandEdwardI.Moser. Theydiscoveredstructuresinthebrainsofmammalswhichareassociated withtheabilityoftheanimalstofindtheirway.JohnO’Keefediscovered “placecells”,whichfireonlywhenananimalwasataparticularplacein amaze.Theremainderofthechapterdiscussesotheranalogousexamples ofpathfinding

Thenextchapter,alsonewinthethirdedition,isentitled TheEvolutionofHumanLanguages.Theworld-famouslinguisticscientistNoam Chomskyhascorrectlypointedoutthathumanlanguagesarequalitatively

differentfromanimallanguages.Hehasalsoassertedthathumansacquiredtheirastonishinglinguisticabilitiesquitesuddenly.Thiscontradicts CharlesDarwin’sviewofevolutionarychangeastakingplaceveryslowly, throughmanysmallsteps,witheachsmallpositivestepbeingconfirmedby theforcesofnaturalselection.Nevertheless,becauseofProfessorChomsky’sstature,weneedtotakehisassertionofsuddenchangeseriously.

Inthenewchapteron TheEvolutionofHumanLanguages,weexplore thehypothesisthatasinglemutationcausedtheduplicationofthebrain structuresdiscoveredbythe2014NobelLaureates.Thenoneoftheduplicatestructurescouldhavebeenquicklymodifiedandusedtoexpand humanlinguisticabilities.Inhisdiscussionofserialhomologies,Darwin himselfnotedhowoftenentirestructuresseemtohavebeenduplicated.

Thishypothesisgivesusaplausibleexplanationforarelativelysuddenacquisitionbyhumansoftheirextraordinarylinguisticabilities,and itwouldjustify,inDarwinianterms,ProfessorChomsky’sseeminglyantiDarwinianassertion.

Anothernewchapterisentitled TheMechanismofCellDifferentiation Thischapterdiscussesthespecificmolecularmechanismsofcelldifferentiationinmulticellularorganisms.Weseeanalogiestothedecisiontrees discussedintheearlierchapteron Pathfinding.

Finally,thelastchapter, LookingTowardstheFuture,hasbeengreatly expanded,toreflecttheseriousproblemsthattheworldiscurrentlyfacing, forexamplethethreatofcatastrophicclimatechange.

PIONEERSOFEVOLUTIONARY THOUGHT

Aristotle

Aristotlewasbornin381B.C.,thesonofthecourtphysicianoftheking ofMacedon,andattheageofseventeenhewenttoAthenstostudy.He joinedPlato’sAcademyandworkedtherefortwentyyearsuntilPlatodied. AristotlethenlefttheAcademy,sayingthathedisapprovedoftheemphasis onmathematicsandtheoryandthedeclineofnaturalscience.Afterserving astutorforAlexanderofMacedon,hefoundedaschoolofhisowncalled theLyceum.AttheLyceum,hebuiltupacollectionofmanuscriptswhich resembledthelibraryofamodernuniversity.

Aristotlewasaverygreatorganizerofknowledge,andhiswritingsalmostformaone-manencyclopedia.Hisbestworkwasinbiology,where hestudiedandclassifiedmorethanfivehundredanimalspecies,manyof whichhealsodissected.InAristotle’sclassificationoflivingthings,he showsanawarenessoftheinterrelatednessofspecies.Thisinterrelatedness wasmuchlaterusedbyDarwinasevidenceforthetheoryofevolution. OnecannotreallysaythatAristotledevelopedatheoryofevolution,but hewasgropingtowardstheidea.Inhishistoryofanimals,hewrites:

“Natureproceedslittlebylittlefromlifelessthingstoanimallife,so thatitisimpossibletodetermineeithertheexactlineofdemarcation,or onwhichsideofthelineanintermediateformshouldlie.Thus,nextafter lifelessthingsintheupwardscalecomestheplant.Ofplants,onewilldiffer fromanotherastoitsapparentamountofvitality.Inaword,thewhole plantkingdom,whilstdevoidoflifeascomparedwiththeanimal,isyet endowedwithlifeascomparedwithothercorporealentities.Indeed,there isobservedinplantsacontinuousscaleofascenttowardstheanimal.”

Aristotle’sclassificationoflivingthings,startingatthebottomofthe scaleandgoingupward,isasfollows:inanimatematter,lowerplantsand

sponges,higherplants,jellyfish,zoophytesandascidians,molluscs,insects, jointedshellfish,octopusesandsquids,fishandreptiles,whales,landmammalsandman.TheacutenessofAristotle’sobservationandanalysiscan beseenfromthefactthatheclassifiedwhalesanddolphinsasmammals (wheretheybelong)ratherthanasfish(wheretheysuperficiallyseemto belong,andwheremanyancientwritersplacedthem).

AmongAristotle’sbiologicalwritings,thereappearsastatementthat clearlyforeshadowstheprincipleofnaturalselection,laterindependently discoveredbyDarwinandWallaceandfullydevelopedbyDarwin.Aristotlewrote:“Wheresoever,therefore...allpartsofonewholehappenedlike asiftheyweremadeforsomething,thesewerepreserved,havingbeenappropriatelyconstitutedbyaninternalspontaneity;andwheresoeverthings werenotthusconstituted,theyperished,andstillperish”.

OneofAristotle’simportantbiologicalstudieswashisembryological investigationofthedevelopingchick.Eversincehistime,thechickhas beentheclassicalobjectforembryologicalstudies.Healsostudiedthe four-chamberedstomachoftheruminantsandthedetailedanatomyofthe mammalianreproductivesystem.Heuseddiagramstoillustratecomplex anatomicalrelationships—animportantinnovationinteachingtechnique.

Averr¨oes

Aristotle’sevolutionaryideaswererevivedandextendedinthewritingsof theIslamicphilosopherAverr¨oes,1 wholivedinSpainfrom1126to1198. HiswritingshadagreatinfluenceonWesternthought.Averr¨oesshocked bothhisMoslemandhisChristianreadersbyhisthoughtfulcommentaries ontheworksofAristotle,inwhichhemaintainedthattheworldwasnot createdatadefiniteinstant,butthatitinsteadevolvedoveralongperiod oftime,andisstillevolving.

LikeAristotle,Averr¨oesseemstohavebeengropingtowardstheideas ofevolutionwhichwerelaterdevelopedingeologybyLyellandinbiology byDarwinandWallace.Muchofthescholasticphilosophywrittenatthe UniversityofParisduringthe13thcenturywasaimedatrefutingthedoctrinesofAverr¨oes;butnevertheless,hisideassurvivedandhelpedtoshape themodernpictureoftheworld.

1 AbulWalidMahommedIbnAchmed,IbnMahommedIbnRosched.

Themysteryoffossils

DuringthelifetimeofLeonardodaVinci(1452–1519)theexistenceoffossil shellsintherocksofhighmountainrangeswasrecognizedanddiscussed. “...theshellsinLombardyareatfourlevels”,Leonardowrote,“andthusit iseverywhere,havingbeenmadeatvarioustimes...Thestratifiedstones ofthemountainsarealllayersofclay,depositedoneabovetheotherbythe variousfloodsoftherivers.”Leonardohadnopatiencewiththeexplanation givenbysomeofhiscontemporaries,thattheshellshadbeencarriedto mountaintopsbythedelugedescribedintheBible.“Iftheshellshadbeen carriedbythemuddywatersofthedeluge”,hewrote,“theywouldhave beenmixedup,andseparatedfromeachotheramidstthemud,andnot inregularstepsandlayers.”NordidLeonardoagreewiththeopinionthat theshellssomehowgrewwithintherocks:“Suchanopinioncannotexist inabrainofmuchreason”,hewrote,“becauseherearetheyearsoftheir growth,numberedontheirshells,andtherearelargeandsmallonesto beseen,whichcouldnothavegrownwithoutfood,andcouldnothavefed withoutmotion...andheretheycouldnotmove.”

Leonardobelievedthatthefossilshellswereoncepartoflivingorganisms,thattheywereburiedinstrataunderwater,andmuchlaterliftedto thetopsofmountainsbygeologicalupheavals.Howeverhisacuteobservationshadlittleinfluenceontheopinionsofhiscontemporariesbecausethey appearamongthe4,000orsopagesofnoteswhichhewroteforhimselfbut neverpublished.

ItwaslefttotheDanishscientistNielsStensen(1638–1686)(usually knownbyhisLatinizedname,Steno)toindependentlyrediscoverandpopularizethecorrectinterpretationoffossilsandofrockstrata.Steno,who hadstudiedmedicineattheUniversityofLeiden,wasworkinginFlorence, wherehisanatomicalstudiesattractedtheattentionoftheGrandDuke ofTuscany,FerdenandII.Whenanenormoussharkwascaughtbylocal fishermen,theDukeorderedthatitsheadbebroughttoStenofordissection.TheDanishanatomistwasstruckbyshapeoftheshark’steeth,which remindedhimofcertaincuriouslyshapedstonescalledglossopetraethat weresometimesfoundembeddedinlargerrocks.Stenoconcludedthatthe similarityofformwasnotjustacoincidence,andthattheglossopetrae wereinfacttheteethofonce-livingsharkswhichhadbecomeembeddedin themuddysedimentsatthebottomoftheseaandgraduallychangedto stone.Stenousedthecorpusculartheoryofmatter,aforerunnerofatomic theory,toexplainhowthecompositionofthefossilscouldhavechanged

whiletheirformremainedconstant.Stenoalsoformulatedalawofstrata, whichstatesthatinthedepositionoflayersofsediment,laterconvertedto rock,theoldestlayersareatthebottom.

InEngland,thebrilliantandversatileexperimentalscientistRobert Hooke(1635–1703)addedtoSteno’scorrectinterpretationoffossilsby noticingthatsomefossilspeciesarenotrepresentedbyanylivingcounterparts.Heconcludedthat“therehavebeenmanyotherSpeciesofCreatures informerAges,ofwhichwecanfindnoneatpresent;andthat’tisnotunlikelyalsobutthattheremaybediversnewkindsnow,whichhavenot beenfromthebeginning.”

SimilarobservationsweremadebytheFrenchnaturalist,Georges-Louis Leclerc,ComtedeBuffon(1707–1788),whowrote:“Wehavemonuments takenfromthebosomoftheEarth,especiallyfromthebottomofcoaland slatemines,thatdemonstratetousthatsomeofthefishandplantsthat thesematerialscontaindonotbelongtospeciescurrentlyexisting.”Buffon’spositionaskeeperoftheJardinduRoi,theFrenchbotanicalgardens, allowedhimtimeforwriting,andwhileholdingthispostheproduceda 44-volumeencyclopediaofnaturalhistory.Inthisenormous,clearlywritten,andpopularwork,Buffonchallengedthetheologicaldoctrineswhich maintainedthatallspecieswerecreatedindependently,simultaneouslyand miraculously,6,000yearsago.Asevidencethatspecieschange,Buffon pointedtovestigialorgans,suchasthelateraltoesofthepig,whichmay havehadausefortheancestorsofthepig.Hethoughtthatthedonkey mightbeadegeneraterelativeofthehorse.Buffonbelievedtheearthto bemucholderthanthe6,000yearsallowedbytheBible,buthisestimate, 75,000years,greatlyunderestimatedthetrueageoftheearth.

ThegreatScottishgeologistJamesHutton(1726–1797)hadafarmore realisticpictureofthetrueageoftheearth.Huttonobservedthatsome rocksseemedtohavebeenproducedbythecompressionofsedimentslaid downunderwater,whileotherrocksappearedtohavehardenedafterpreviousmelting.Thusheclassifiedrocksasbeingeitherigneousorelsesedimentary.Hebelievedthefeaturesoftheearthtohavebeenproducedby theslowactionofwind,rain,earthquakesandotherforceswhichcanbe observedtoday,andthattheseforcesneveractedwithgreaterspeedthan theydonow.Thisimpliedthattheearthmustbeimmenselyold,and Huttonthoughtitsagetobealmostinfinite.Hebelievedthattheforces whichturnedseabedsintomountainrangesdrewtheirenergyfromthe heatoftheearth’smoltencore.TogetherwithSteno,Huttonisconsidered tobeoneofthefathersofmoderngeology.Hisuniformitarianprinciples,

andhisbeliefinthegreatageoftheearthwerelatergivenwidecirculation byCharlesDarwin’sfriendandmentor,SirCharlesLyell(1797–1875),and theypavedthewayforDarwin’sapplicationofuniformitarianismtobiology.Atthetimeofhisdeath,Huttonwasworkingonatheoryofbiological evolutionthroughnaturalselection,buthismanuscriptsonthissubject remainedunknownuntil1946

Condorcet

FurthercontributionstotheideaofevolutionweremadebytheFrench mathematicianandsocialphilosopherMarie-Jean-Antoine-NicolasCaritat, MarquisdeCondorcet,whowasbornin1743.In1765,whenhewasbarely 22yearsold,Condorcetpresentedan EssayontheIntegralCalculus to theAcademyofSciencesinParis.Theyear1785sawthepublicationof Condorcet’shighlyoriginalmathematicalwork, Essaisurl’applicationde l’analyse`alaprobabilit´edesdecisionsrendues`alapluralit´edesvoix, 2 in whichhepioneeredtheapplicationofthetheoryofprobabilitytothesocialsciences.Alater,muchenlarged,editionofthisbookextendedthe applicationstogamesofchance.

Condorcethadalsobeenoccupied,sinceearlychildhood,withtheidea ofhumanperfectibility.Hewasconvincedthattheprimarydutyofevery personistocontributeasmuchaspossibletothedevelopmentofmankind, andthatbymakingsuchacontribution,onecanalsoachievethegreatestpossiblepersonalhappiness.WhentheFrenchRevolutionbrokeoutin 1789,hesawitasanunprecedentedopportunitytodohispartinthecause ofprogress;andheenteredthearenawholeheartedly,eventuallybecomingPresidentoftheLegislativeAssembly,andoneofthechiefauthorsof theproclamationwhichdeclaredFrancetobearepublic.Unfortunately, Condorcetbecameabitterenemyofthepowerfulrevolutionarypolitician, Robespierre,andhewasforcedtogointohiding.

AlthoughRobespierre’sagentshadbeenunabletoarresthim,Condorcetwassentencedtotheguillotineinabsentia.Heknewthatinall probabilityhehadonlyafewweeksormonthstolive;andhebeganto writehislastthoughts,racingagainsttime.Condorcetreturnedtoaproject whichhehadbegunin1772,ahistoryoftheprogressofhumanculture, stretchingfromtheremotepasttothedistantfuture.Guessingthathe wouldnothavetimetocompletethefull-scaleworkhehadonceplanned,

2 EssayontheApplicationofAnalysistotheProbabilityofDecisionsTakenAccording toaPluralityofVotes.

hebeganasketchoroutline: Esquissed’untableauhistoriquedesprogr`es del’esprithumain. 3

Inhis Esquisse,Condorcetenthusiasticallyendorsedtheideaofinfinite humanperfectibilitywhichwascurrentamongthephilosophersofthe18th century;andheanticipatedmanyoftheevolutionaryideaswhichCharles Darwinlaterputforward.Hecomparedhumanswithanimals,andfound manycommontraits.AccordingtoCondorcet,animalsareabletothink, andeventothinkrationally,althoughtheirthoughtsareextremelysimple comparedwiththoseofhumans.Condorcetbelievedthathumanshistoricallybegantheirexistenceonthesamelevelasanimalsandgradually developedtotheirpresentstate.Sincethisevolutiontookplacehistorically, hereasoned,itisprobable,oreveninevitable,thatasimilarevolutionin thefuturewillbringmankindtoalevelofphysical,mentalandmoraldevelopmentwhichwillbeassuperiortoourownpresentstateaswearenow superiortoanimals.

Atthebeginningofhismanuscript,Condorcetstatedhisbelief“that naturehassetnoboundsontheimprovementofhumanfacilities;thatthe perfectibilityofmanisreallyindefinite;andthatitsprogressishenceforth independentofanypowertoarrestit,andhasnolimitexcepttheduration oftheglobeuponwhichnaturehasplacedus”.Hestatedalsothat“the moralgoodnessofmanisanecessaryresultofhisorganism;anditis,like allhisotherfacilities,capableofindefiniteimprovement.”

Liketheotherscientistsandphilosophersofhisperiod,CondorcetacceptedtheNewtonianideaofanorderlycosmosruledbynaturallawsto whichtherearenoexceptions.Heassertedthatthesamenaturallawsmust governhumanevolution,sincehumansarealsopartofnature.Againand again,Condorcetstressedthefundamentalsimilaritybetweenhumansand animals;andheregardedalllivingthingsasbelongingtothesamegreat family.(ItisperhapsthisinsightwhichmadeCondorcetsosensitiveto thefeelingsofanimalsthatheevenavoidedkillinginsects.)Toexplainthe presentdifferencesbetweenhumansandanimals,Condorcetmaintained, weneedonlyimaginegradualchanges,continuingoveranextremelylong periodoftime.Theselong-continuedsmallchangeshaveveryslowlyimprovedhumanmentalabilitiesandsocialorganization,sothatnow,atthe endofanimmenseintervaloftime,largedifferenceshaveappearedbetween ourselvesandlowerformsoflife.

3 SketchofanHistoricalPictureoftheProgressoftheHumanSpirit.

Condorcetregardedthefamilyastheoriginalsocialunit;andin Esquisse hecalledattentiontotheunusuallylongperiodofdependencywhich characterizesthegrowthandeducationofhumanoffspring.Thisprolonged childhoodisuniqueamonglivingbeings.Itisneededforthehighlevelof mentaldevelopmentofthehumanspecies;butitrequiresastablefamily structuretoprotecttheyoungduringtheirlongupbringing.Thus,accordingtoCondorcet,biologicalevolutionbroughtintoexistenceamoral precept,thesanctityofthefamily.

Similarly,Condorcetwrote,largerassociationsofhumanswouldhave beenimpossiblewithoutsomedegreeofaltruismandsensitivitytothesufferingofothersincorporatedintohumanbehavior,eitherasinstinctsoras moralpreceptsorboth;andthustheevolutionoforganizedsocietyentailed thedevelopmentofsensibilityandmorality.UnlikeRousseau,Condorcet didnotregardhumansinorganizedcivilizationsasdegradedandcorrupt comparedto“natural”man;insteadhesawcivilizedhumansasmoredevelopedthantheirprimitiveancestors.

Believingthatignoranceanderrorareresponsibleforvice,Condorcet discussedwhathebelievedtobethemainmistakesofcivilization.Among thesehenamedhereditarytransmissionofpower,inequalitybetweenmen andwomen,religiousbigotry,disease,war,slavery,economicinequality, andthedivisionofhumanityintomutuallyexclusivelinguisticgroups.Regardingdisease,Condorcetpredictedthattheprogressofmedicalscience wouldultimatelyabolishit.Also,hemaintainedthatsinceperfectibility (i.e.,evolution)operatesthroughoutthebiologicalworld,thereisnoreason whymankind’sphysicalstructuremightnotgraduallyimprove,withthe resultthathumanlifeintheremotefuturecouldbegreatlyprolonged.

Condorcetbelievedthattheintellectualandmoralfacilitiesofmanare capableofcontinuousandsteadyimprovement;andhethoughtthatone ofthemostimportantresultsofthisimprovementwouldbetheabolition ofwar.Ashumansbecomeenlightenedinthefuture(hebelieved)they willrecognizewarasanatrociousandunnecessarycauseofsuffering;and aspopulargovernmentsreplacehereditaryones,warsfoughtfordynasticreasonswilldisappear.Nexttovanishwillbewarsfoughtbecauseof conflictingcommercialinterests.Finally,theintroductionofauniversal languagethroughouttheworldandtheconstructionofperpetualconfederationsbetweennationswilleliminate,Condorcetpredicted,warsbasedon ethnicrivalries.

Withbetterlaws,socialandfinancialinequalitieswouldtendtobecome leveled.Tomakethesocialconditionsoftheworkingclassmoreequalto

thoseofthewealthy,Condorcetadvocatedasystemofinsurance(either privateorgovernmental)wherethesavingsofworkerswouldbeusedto providepensionsandtocareforwidowsandorphans.Also,sincesocialinequalityisrelatedtoinequalityofeducation,Condorcetadvocatedasystem ofuniversalpubliceducationsupportedbythestate.

Attheendofhis Esquisse,Condorcetwrotethatanypersonwhohas contributedtothebestofhisabilitytotheprogressofmankindbecomes immunetopersonaldisasterandsuffering.Heknowsthathumanprogress isinevitable,andcantakecomfortandcouragefromhisinnerpicture oftheepicmarchofmankind,throughhistory,towardsabetterfuture. EventuallyCondorcet’shiding-placewasdiscovered.Hefledindisguise, butwasarrestedafterafewdays;andhediedsoonafterwardsinhisprison cell.AfterCondorcet’sdeaththecurrentsofrevolutionarypoliticsshifted direction.Robespierre,theleaderoftheTerror,washimselfsoonarrested. TheexecutionofRobespierretookplaceonJuly25,1794,onlyafewmonths afterthedeathofCondorcet.

Condorcet’s Esquissed’untableauhistoriquedesprogr`esdel’esprith main waspublishedposthumouslyin1795.Inthepost-Thermidorreconstruction,theConventionvotedfundstohaveitprintedinalargeedition anddistributedthroughoutFrance,thusadoptingthe Esquisse asitsofficial manifesto.ThissmallbutpropheticbookistheoneforwhichCondorcetis nowchieflyremembered.Itwasdestinedtoestablishtheforminwhichthe eighteenth-centuryideaofprogresswasincorporatedintoWesternthought, anditprovokedRobertMalthustowrite AnEssayonthePrincipleofPopulation.Condorcet’sideasareimportantbecauseheconsideredthegenetic evolutionofplantsandanimalsandhumanculturalevolutiontobetwo partsofasingleprocess.

Linnaeus

Meanwhile,duringthe17thand18thcenturies,naturalistshadbeengatheringinformationonthousandsofspeciesofplantsandanimals.This huge,undigestedheapofinformationwasputintosomeorderbythegreat Swedishnaturalist,CarlvonLinn´e(1707–1778),whoisusuallycalledby hisLatinname,CarolusLinnaeus.

LinnaeuswasthesonofaSwedishpastor.Evenasayoungboy,hewas fondofbotany,andaftermedicalstudiesatLund,hebecamealecturer inbotanyattheUniversityofUppsala,nearStockholm.In1732,the25year-oldLinnaeuswasaskedbyhisuniversitytovisitLaplandtostudythe plantsinthatremotenorthernregionofSweden.

LinnaeustravelledfourthousandsixhundredmilesinLapland,andhe discoveredmorethanahundrednewplantspecies.In1735,hepublished hisfamousbook, SystemaNaturae,inwhichheintroducedamethodfor theclassificationofalllivingthings.

Linnaeusnotonlyarrangedcloselyrelatedspeciesintogenera,buthe alsogroupedrelatedgeneraintoclasses,andrelatedclassesintoorders. (LatertheFrenchnaturalistCuvier(1769–1832)extendedthissystemby groupingrelatedordersintophyla.)Linnaeusintroducedthebinomial nomenclature,stillusedtoday,inwhicheachplantoranimalisgivena namewhosesecondpartdenotesthespecieswhilethefirstpartdenotes thegenus.

Althoughhestartedalineofstudywhichledinevitablytothetheory ofevolution,Linnaeushimselfbelievedthatspeciesareimmutable.He adheredtothethen-conventionalviewthateachspecieshadbeenindependentlyandmiraculouslycreatedsixthousandyearsago,asdescribedinthe BookofGenesis.

Linnaeusdidnotattempttoexplainwhythedifferentspecieswithina genusresembleeachother,norwhycertaingeneraarerelatedandcanbe groupedintoclasses,etc.Itwasnotuntilacenturylaterthattheseresemblanceswereunderstoodastruefamilylikenesses,sothattheresemblance betweenacatandalioncametobeunderstoodintermsoftheirdescent fromacommonancestor.4

ErasmusDarwin

AmongtheardentadmirersofLinnaeuswasthebrilliantphysician-poet, ErasmusDarwin(1731–1802),whowasconsideredbyColeridgetohave“... agreaterrangeofknowledgethananyothermaninEurope”.Hewasalso thebestEnglishphysicianofhistime,andGeorgeIIIwishedtohavehim ashispersonaldoctor.However,Darwinpreferredtoliveinthenorthof EnglandratherthaninLondon,andherefusedtheposition.

In1789,ErasmusDarwinpublishedabookcalled TheBotanicGarden orTheLovesofthePlants.Itwasabookofbotanywritteninverse,and intheprefaceDarwinstatedthathispurposewas“...toinlistimagination underthebannerofscience...”andtocallthereader’sattentionto”the

4 LinnaeuswastoDarwinwhatKeplerwastoNewton.Kepleraccuratelydescribed themotionsofthesolarsystem,butitremainedforNewtontoexplaintheunderlying dynamicalmechanism.Similarly,Linnaeussetforthadescriptive“familytree”ofliving things,butDarwindiscoveredthedynamicmechanismthatunderliestheobservations.

immortalworksofthecelebratedSwedishnaturalist,Linnaeus”.Thisbook wasimmenselypopularatthetimewhenitwaswritten,butitwaslater satirizedbyPitt’sForeignMinister,Canning,whosebook TheLovesofthe Triangles ridiculedDarwin’spoeticstyle.

In1796ErasmusDarwinpublishedanotherbook,entitled Zoonomia,in whichheproposedatheoryofevolutionsimilartothatwhichhisgrandson,CharlesDarwin,waslatertomakefamous.“...Whenwethinkover thegreatchangesintroducedintovariousanimals”,Darwinwrote,“asin horses,whichwehaveexercisedfordifferentpurposesofstrengthandswiftness,carryingburthensorinrunningraces;orindogs,whichhavebeen cultivatedforstrengthandcourage,asthebull-dog;orforacutenessof hissenseofsmell,asinthehoundandspaniel;orfortheswiftnessofhis feet,asthegreyhound;orforhisswimminginthewater,orfordrawing snow-sledges,astherough-haireddogsofthenorth...andaddtothesethe greatchangeofshapeandcolorwhichwedailyseeproducedinsmaller animalsfromourdomesticationofthem,asrabbitsorpigeons;...whenwe revolveinourmindsthegreatsimilarityofstructurewhichobtainsinall thewarm-bloodedanimals,aswellasquadrupeds,birdsandamphibious animals,asinmankind,fromthemouseandthebattotheelephantand whale;weareledtoconcludethattheyhavealikebeenproducedfroma similarlivingfilament.”

“Woulditbetoobold”,ErasmusDarwinasked,“toimaginethatin thegreatlengthoftimesincetheearthbegantoexist,perhapsmillionsof agesbeforethecommencementofthehistoryofmankind—woulditbeto boldtoimaginethatallwarm-bloodedanimalshavearisenfromoneliving filament?”

Lamarck

InFrance,JeanBaptistePierreAntoinedeMonet,ChevalierdeLamarck (1744–1829),contributedimportantlytothedevelopmentofevolutionary ideas.AfteraperiodintheFrencharmy,fromwhichhewasforcedto retirebecauseofillness,Lamarckbecamebotanisttotheking,andlater ProfessorofInvertebrateZoologyattheMuseumofNaturalHistoryin Paris.Lamarckdeservestobecalledthefatherofinvertebratezoology. Linnaeushadexhaustedhisenergyonthevertebrates,andhehadleftthe invertebratesindisorder.TheirclassificationislargelyduetoLamarck: Hedifferentiatedtheeight-leggedarachnids,suchasspidersandscorpions, fromsix-leggedinsects;heestablishedthecategoryofcrustaceansforcrabs,

lobstersetc.;andheintroducedthecategoryofechinodermsforstarfish, sea-urchinsetc.Between1785and1822,Lamarckpublishedsevenhuge volumesofatreatiseentitled NaturalHistoryofInvertebrates.However,it isforhisbook ZoologicalPhilosophy,publishedin1809,thattheChevalier deLamarckischieflyrememberedtoday.

Inhis ZoologicalPhilosophy,Lamarckstatedhisbeliefthatthespecies withinagenusowetheirsimilaritytodescentfromacommonancestor. HewasthefirstprominentbiologistsincetheageofAristotletobelieve thatspeciesarenotimmutablebutthattheyhavechangedduringthelong historyoftheearth.

AlthoughLamarckdeservesmuchcreditasapioneerofevolutionary thought,hewasseriouslywrongaboutthemechanismofchange.Forexample,Lamarckbelievedthatthelongneckofthegiraffeevolvedbecause eachgiraffestretcheditsneckslightlyinanefforttoreachtheleaveson hightrees.Hebelievedthattheseslightly-stretchedneckscouldbeinherited,andthus,inthisway,overmanygenerations,thenecksofgiraffes hadgrownlongerandlonger.AlthoughLamarckwasrightinhisgeneral pictureofevolution,hewasmistakeninthedetailedmechanismwhichhe proposed,sincelaterexperimentsprovedconclusivelythat,ingeneral,acquiredcharacteristicscannotbeinherited.(Onemustsay“ingeneral”, becauseinthecaseofsymbiosisandgeneticfusion,acquiredcharacteristicsareinherited.Plasmidscontaininggeneticmaterialarealsofrequently exchangedbetweenbacteria.Furthermore,inhumanculturalevolution, innovationscanbepassedontofuturegenerations.Wewilldiscussthese Lamarckianmechanismsofevolutioninlaterchapters.)

ThedebatesbetweenCuvierandGeoffroySt.Hilaire

In1830,ayearafterthedeathofLamarck,afamousseriesofdebatestook placebetweenGeorgesLeopoldDagobert,BaronCuvier(1769–1832)and EtienneGeoffroySt.Hilaire(1772–1844).Thetwomen,bothprofessorsat theMuseeNationald’HistoireNaturelleinParis,wereclosefriendsandscientificcollaborators.However,theydifferedintheiropinions,especiallyon thequestionofwhethertheformofananimal’spartsledtotheirfunction, orwhetherthereversewastrue.Cuvieralmostsinglehandedlyfounded thedisciplineofvertebratepaleontology,andhefirmlyestablishedthefact thatextinctionshavetakenplace.However,hedidnotbelieveinevolution. In1828,Cuvierwrote:“Ifthereareresemblancesbetweentheorgansof fishesandthoseofothervertebrateclasses,itisonlyinsofarasthereare

resemblancesbetweentheirfunctions.”Inotherwords,functionproduces form.Cuvierdeniedthatsimilarityofformimplieddescentfromacommon ancestor.

St.Hilaire,ontheotherhand,consideredallvertebratestobemodificationsofasinglearchetype.Hemaintainedthatsimilarvestigialorgans andsimilaritiesinembryonicdevelopmentimplieddescentfromacommon ancestor.Hewasespeciallyinterestedinhomologies,thatis,caseswhere similarstructuresintwodifferentorganismsareusedfortwodifferentpurposes.In1829,St.Hilairewrote:“Animalshavenohabitsbutthosethat resultfromthestructureoftheirorgans:ifthelattervaries,therevaryin thesamemanneralltheirspringsofaction,alltheirfacilities,andalltheir actions.”

Theopposingviewpointsofthetwomenledtoafamousseriesofeight publicdebates,whichtookplacefromFebruarytoApril,1830.Although Cuvierwasthoughtbymostobserverstohavewonthedebates,St.Hilaire’s beliefinevolutioncontinued,asdidthefriendshipbetweenthetwonaturalists.In1832St.HilairepartiallyanticipatedDarwin’stheoryofevolution throughnaturalselection:“Theexternalworldisall-powerfulinalteration oftheformoforganizedbodies...”,hewrote,“These[modifications]are inherited,andtheyinfluencealltherestoftheorganizationoftheanimal, becauseifthesemodificationsleadtoinjuriouseffects,theanimalswhich exhibitthemperishandarereplacedbyothersofasomewhatdifferent form,aformchangedsoastobeadaptedtothenewenvironment.”

Suggestionsforfurtherreading

(1) P.J.Bowler, Evolution:TheHistoryofanIdea,UniversityofCalifornia Press,(1989).

(2) D.J.Putuyma, EvolutionaryBiology,SinauerAssociates,Sunderland Mass.,(1986).

(3) B.Glass,0.Temkin,andW.L.Strauss,eds., ForerunnersofDarwin: 1745-1859,JohnsHopkinsPress,Baltimore,(1959).

(4) R.Milner, TheEncyclopediaofEvolution,anOwlBook,HenryHolt andCompany,NewYork,(1990).

(5) T.A.Appel, TheCuvier-GeoffroyDebate:FrenchBiologyinthe DecadesbeforeDarwin,OxfordUniversityPress,(1987).

(6) P.J.Bowler, FossilsandProgress:PaleontologyandtheIdeaofProgressiveEvolutionintheNineteenthCentury,ScienceHistoryPublications, NewYork,(1976).

(7) H.Torrens, PresidentialAddress:MaryAnning(1799-1847)ofLyme; ’thegreatestfossilisttheworldeverknew’,BritishJournaloftheHistory ofScience, 28,257-284,(1995).

(8) P.Corsi, TheAgeofLamarck:EvolutionaryTheoriesinFrance,17901834,UniversityofCaliforniaPress,Berkeley,(1988).

(9) C.C.Gillispie, GenesisandGeology:AStudyintheRelationsofScientificThought,NaturalTheologyandSocialOpinioninGreatBritain, 1790-1850,HarvardUniversityPress,CambridgeMass.,(1951).

(10) M.McNeil, UndertheBannerofScience:ErasmusDarwinandhis Age,ManchesterUniversityPress,Manchester,(1987).

(11) L.G.Wilson, SirCharlesLyell’sScientificJournalsontheSpecies Question,YaleUniversityPress,NewHaven,(1970).

(12) M. ’Espinasse,RobertHooke,2nded.,U.ofCaliforniaPress,(1962).

(13) M.J.S.Rudwick, TheMeaningofFossils:EpisodesintheHistoryof Paleontology,2nded.,UniversityofChicagoPress,(1985).

(14) A.B.Adams, EternalQuest:TheStoryoftheGreatNaturalists,G.P. Putnam’sSons,NewYork,(1969).

(15) A.S.Packard, Lamarck,theFounderofEvolution:HisLifeandWork, Longmans,Green,andCo.,NewYork,(1901).

(16) C.Darwin, AnhistoricalsketchoftheprogressofopinionontheOrigin ofSpecies,previouslytothepublicationofthiswork,Appendedtothird andlatereditionsof OntheOriginofSpecies,(1861).

(17) L.Eiseley, Darwin’sCentury:EvolutionandtheMenwhoDiscovered It,Doubleday,NewYork,(1958).

(18) H.F.Osborne, FromtheGreekstoDarwin:TheDevelopmentofthe EvolutionIdeaThroughTwenty-FourCenturies,CharlesScribnerand Sons,NewYork,(1929).

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