CHAPTER2 THECHEMICALBASISOFLIFE
CHAPTEROVERVIEW
Thischapterintroducesverybasicconceptsofchemistry,emphasizingthestructureofatomsandhow theycombine(formbonds).Thetypesofbonds,whichincludeionic,covalent,andhydrogenbonds,are introduced,andtheirimportanceinvariousmoleculesinthehumanbodyisdiscussed.Ionsaredefined, andalistofionsthatwillbediscussedinlaterchaptersispresented.Typesofchemicalreactionsare considered,andthefactorsthatinfluencereactionrates,includingenzymes,arediscussed.Studentsare introducedtotheconceptofpH,andthecharacteristicsthatmakewatersoimportantforlivingthings. Thechapteralsodiscussesthestructure,buildingblocks,importantexamples,andfunctionsoflarge organicmolecules,includingcarbohydrates,proteins,lipids,andnucleicacids.Adenosinetriphosphate anditsimportanceastheenergystorageformofthebodyisalsodiscussed.
STUDENTLEARNINGOUTCOMES
Afterreadingthissection,thestudentshouldbeableto:
2.01A.Definechemistryandstateitsrelevancetoanatomyandphysiology.
2.01B.Definematter,mass,andweight.
2.01C.Distinguishbetweenanelementandanatom.
2.01D.Defineatomicnumberandmassnumber.
2.01E.Namethesubatomicparticlesofanatom,andindicatetheirlocation.
2.01F.Compareandcontrastionicandcovalentbonds.
2.01G.Explainwhatcreatesahydrogenbondandrelateitsimportance.
2.01H.Differentiatebetweenamoleculeandacompound.
2.01I.Describetheprocessofdissociation.
2.02A.Summarizethecharacteristicsofsynthesis,decomposition,andexchangereactions.
2.02B.Explainhowreversiblereactionsproducechemicalequilibrium.
2.02C.Distinguishbetweenchemicalreactionsthatreleaseenergyandthosethattakeinenergy.
2.02D.Describethefactorsthatcanaffecttherateofchemicalreactions.
2.03A.DescribethepHscaleanditsrelationshiptoacidicandbasicsolutions.
2.03B.Explaintheimportanceofbuffersinorganisms.
2.04A.Distinguishbetweeninorganicandorganicmolecules.
2.04B.Describehowthepropertiesofoxygen,carbondioxide,andwatercontributetotheirphysiological functions.
2.05A.Describethestructuralorganizationandmajorfunctionsofcarbohydrates,lipids,proteins,and nucleicacids.
2.05B.Explainhowenzymeswork.
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KEYPOINTSTOEMPHASIZEWHENTEACHINGTHECHEMICALBASISOFLIFE
Relationshipbetweenstructureandfunction:
Thestructureofanatom,particularlyitsoutermostelectrons,determinesitschemicalbehavior.The electronarrangementdetermineswhetheranatomgainselectrons,loseselectrons,orshareselectrons. Atomsthatgainorloseelectronsformions(andionicbonds),andatomsthatshareelectronsform covalentbonds.Thetypeofbond,andhowmanybondseachatomforms,determinethestructureand futurereactivityofmolecules.Lifedependsonarelativelysmallnumberofdifferentelements,because onlythoseelementscanformstable,functionalmolecules.Itisalsoimportantforstudentstorecognize thestructure-functionrelationshipsforenzymesandotherproteinmolecules.Theshapeofprotein moleculesdeterminesandconstrainsthefunctionofthatprotein.Destroyingthatshape(denaturation) destroysthatfunction.Itisagoodideatospendabitoftimediscussingwhatdenaturingactuallydoesto theshapeofamoleculeandthereforetheavailabilityofactivesitesorbindingsitesforothermolecules. Studentshaveadifficulttimethinkingofmoleculesinthreedimensionssomodelsordemonstration aidesmaybenecessary.Theconceptofdenaturationshouldbestressedwhenyoudiscusstheactionsof enzymesandtheirregulation.Theideaofanoptimalrangeforeachenzymeisessentialto understandingmanyregulatorypathwayslateron.Additionally,youcanhighlightseveralgenetic disordersthathavetheirrootsinnon-functionalenzymes.Rememberthatstudentswithpoorerscience backgroundstendtohavetroubledevelopingmentalpicturesofthingsthatareassmallasatoms. Anythingthatyoucanbringintotheclassroomorlabthathelpsstudentsformrobustmentalimageswill behelpful.Onehastobecarefultopointoutthelimitationsofanyspecificthree-dimensionalmodelor simulation,however.
Homeostasis:
Theconceptofchemicalequilibriumis,initsessence,asimplerformationofthedynamicequilibrium establishedandmaintainedbyallofthebody'sprocesses.Helpstudentsexplorethesimilaritiesand differencesbetweenchemicalequilibriaandbiologicalhomeostasis.Oneofthekeyconceptsthatisoften overlookedinthisregardisthefactthatbiologicalorganismsareopensystems,sothemetaphorof chemicalequilibriumasanequivalentforhomeostasisquicklybreaksdown,sinceatruestablechemical equilibriumpresumesaclosedsystem.
Changethroughtime:
Thisisaharderthemetolinkspecificallytothischapter.Theeasiestlong-termchangeexamplesarein thecontextofhowthechemicalstructureofcompounds(collagenfibersinconnectivetissue)become alteredthroughtime(morecross-linking),andasaresultthepropertiesatthenextleveloforganization alsobecomealteredthroughtime(lessflexibility).Theshort-termchangesassociatedwithenergy transformationreactionsareveryimportant.Understandingoflaterprocesses,suchasthemechanismof musclecellcontraction,iseasierifstudentsarealreadyfamiliarwiththepivotalroleofATPinmediating thecellsability(orinability)toproduceaparticularchangeinfunctionataparticulartime.
Celltheoryandbiochemistry:
Asthefoundationallevelsofbiologicalorganization,thepivotalpositionofcellsandbiochemistryin understandinghigherlevelsoforganizationcannotbestressedtoostrongly.Thisverycentralityishard formanystudentstoappreciateandsoneedstobereinforcedinasmanyplacesaspossible.That
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studentshavenotachievedthisfoundationalunderstandingmaybecomeapparentintheiranswersto questionsconcerningphysiologicalmechanismsofcontrolandcell-to-cellcommunication.Students shouldunderstandthatwithoutenzymes,many(ifnotmost)essentialchemicalreactionswouldnot occurfastenoughtosustainlife.Theyshouldalsounderstandthatenzymesdeterminewhichchemical reactionsoccurinacell;thisdeterminesacell's"occupation."Forexample,livercellsdo"liver"things becausetheir"liver"enzymesareactive.Itshouldbestressedagainthateverythingthathappensatthe organelle,cell,tissue,organ,organsystem,andorganismlevelisdeterminedbythethingsthathappenat thechemicallevel.Laterdiscussionsofmembranereceptorsandintracellularcommunicationallhave biochemicalbases.
CONTENTOUTLINE
Topic Page(s) Figures andTables
2.1BasicChemistry
A.Matter,mass,andweight
1.Definitionsofmatter,mass,andweight
2.Introductiontotheinternationalstandard
B.Elementsandatoms
C.Atomicstructure
1.Subatomicparticles
a.Nucleus
Neutrons(neutral)
Protons(positivecharge)
b.Electroncloud
Electrons(negativecharge)
2.Atomicnumber
3.Massnumber
D.Electronsandchemicalbonding
1.Ionicbonding
2.Covalentbonding
a.Single
b.Double
c. Polar
E.Hydrogenbonding
F.Moleculesandcompounds
G.Dissociation 21-26
ClinicalImpact:ClinicalUsesofAtomicParticles 28
2.2ChemicalReactions
A.Classificationofchemicalreactions
1.Synthesisreactions
2.Decompositionreactions
26-30
Table2.1p.22
Fig.2.1p.22
Fig.2.2p.23
Fig.2.3p.23
Table2.2p.24
Fig.2.4p.24
Fig.2.5p.25
Fig.2.6p.25
Table2.3p.25
Fig.2.7p.26
Fig.2.8p.29
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3.Exchangereactions
B.Reversiblereactionsequilibrium
C.Energyandchemicalreactions (Fig.2.8,p.28)
2.Kineticenergy
3.Mechanicalenergy
4.Chemicalenergy
D.Rateofchemicalreactions
1.Reactants
2.Concentration
3.Temperature
4.Catalystsenzymes
2.2AcidsandBases
A.ThepHscale
1.Neutralsolution
2.Acidicsolution
3.Alkaline,orbasicsolution
B.Salts
C.Buffers
2.4.InorganicMolecules
A.Oxygenandcarbondioxide
B.Water
1.Properties
a.Stabilizesbodytemperatureabsorbsheat
b.Protectionlubricant
c. Chemicalreactions
30-31
d.Transportdissolveinwater 31
2.5OrganicMolecules
A.Carbohydrates
1.Monosaccharides
2.Disaccharides
3.Polysaccharides
B.Lipids
1.Fats(triglycerides)
a.Saturated
b.Unsaturated
i.Monounsaturated
ii.Polyunsaturated
2.Phospholipids
a.Hydrophobic
b.Hydrophilic
3.Eicosanoids
a.Prostaglandins
b.Thromboxanes
c. Leukotrienes
4.Steroids
C.Proteins
Fig.2.9p.30
Fig.2.10p.31
31-39
Table2.4p.32
Fig.2.11p.33
Fig.2.12p.34
Fig.2.13p.34
Fig.2.14p.35
Fig.2.15p.35
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1.Aminoacids
2.Denaturation
3.Enzymes
a.Activationenergy
b.Enzymeaction
D.Nucleicacids
1.DNA
2.RNA
E.Adenosinetriphosphate
ACaseinPoint:
LearningOutcomesCorrelationwithQuestionTypes
Fig.2.16p.37
Fig.2.17p.38
Fig.2.18p.38
Fig.2.19p.38
Fig.2.20p.39
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