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PHENOTYPING BANANA GERMPLASM
The Interdisciplinary Research and Education Program of Wageningen University (INREF) funds the research program “Panama disease in banana: multilevel solutions for a global problem�. The program is a public private partnership through co-funding by many partners and comprises seven PhD projects.
PHENOTYPING BANANA GERMPLASM
The project of Fernando Garcia focuses on “The genetic basis and mechanisms of resistance to Panama disease in banana”. Part of the project involves the screening of banana germplasm with the Tropical Race 4 strain of Fusarium oxysporum f.sp. cubense, the causal agent of Panama disease. In this database we present a short summary of collected data that will be frequently updated in order to inform the community. Details of these experiments will eventually be published in peer-reviewed journals. Data can be used with correct citation of the source of information. The following plant information (all available passport data and biological information) was obtained from the following website: http://www.ars-grin.gov
1
García-Bastidas, F., and Kema, G.H.J., (2014, Oct 15). " USDA Banana germplasm phenotyping with Fusarium oxysporum f.sp. cubense Tropical Race 4. Retrieved from http://panamadisease.org/en /research
ZIV TARS #
17169
Accession name
Ziv
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
2
WILLIAMS TARS #
17414
Accession name
Williams
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
3
VOLUNTEER MUSA TARS #
17423
Accession name
Volunter Musa
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
4
VERDIN TARS #
17150
Accession name
Verdin
Group
Red
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
5
VALERY TARS #
17158
Accession name
Valery
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
6
TUU GIA TARS #
17382
Accession name
Tuu Gia
Group
Cultivated diploid
Ploidy/Genome
2X/AA
Microscopy
AA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
7
TMB2X 9128-3 TARS #
18049
Accession name
TMB2X 9128-3
Group
Synthetic hybrid
Ploidy/Genome
-
Microscopy
AA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
8
TIGUA TARS #
17407
Accession name
Tigua (PNG-625)
Group
Iholena
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
9
THOUSAND FINGERS TARS #
17992
Accession name
Thousand Fingers
Group
Pisang Seribu
Ploidy/Genome
3X/AAB
Microscopy
AAA††
††
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
†† Ploidy and/or genomic composition changed from previously reported
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
10
TAIWANESE SOMACLONE TARS #
17395
Accession name
Taiwanese Somaclone
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
11
PRAYING HANDS TARS #
17173
Accession name
Praying hands
Group
Saba
Ploidy/Genome
3X/ABB
Microscopy
ABB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
12
NIÑO COMÚN TARS #
17379
Accession name
Niño Común
Group
Sucrier
Ploidy/Genome
2X/AA
Microscopy
AA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
13
MORADO ENANO TARS #
17425
Accession name
Morado Enano
Group
Red
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
14
MONTECRISTO ENANO TARS #
17428
Accession name
Montecristo Enano
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
15
MANZANO TARS #
17136
Accession name
Manzano
Group
Silk
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
16
LACATAN TARS #
17144
Accession name
Lacatan#
Group
Gros Michel
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
# Accession is incorrect based on microsatellite profile and general clustering
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
17
JOHNSON TARS #
18061
Accession name
Johnson
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); right: infected plant with FocTR4
18
IGCPOCA TARS #
17396
Accession name
Igcpoca
Group
Mutika/Lujugira
Ploidy/Genome
-
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); right: infected plant with FocTR4
19
HIGHGATE TARS #
17153
Accession name
Highgate#
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
# Accession is incorrect based on microsatellite profile and general clustering
Left: Healthy plant and corm (water control); right: infected plant with FocTR4
20
GUINEO ENANO TARS #
17177
Accession name
Guineo Enano
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
21
GURARร N ENANO TARS #
17840
Accession name
Guarรกn Enano
Group
Gross Michel
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
22
GIANT GOVERNOR TARS #
17163
Accession name
Giant Governor
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
23
FALSE HORN DOMINICAN RED TARS #
17813
Accession name
False Horn Dominican Red
Group
Plantain (False-Horn)
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
24
ENANO GIGANTE TARS #
17143
Accession name
Enano Gigante
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
25
DWARF VALERY TARS #
17402
Accession name
Dwarf Valery
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
26
CUBAN RED TARS #
17392
Accession name
Cuban Red
Group
Red
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
27
CRBP 39 TARS #
18056
Accession name
CRBP 39
Group
Synthetic Hybrid
Ploidy/Genome
4X/AAAB
Microscopy
AAAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
28
10-A
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
29
8-A
TARS #
17159
Accession name
8-A
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
30
6-A TARS #
17130
Accession name
6-A
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
31
5-A TARS #
17135
Accession name
5-A
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
32
4-R-2,500 TARS #
17151
Accession name
4-R-2,500
Group
Gros Michel
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
33
3-R-2,500 TARS #
17141
Accession name
3-R-2,500
Group
Gros Michel
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
34
2-A TARS #
17125
Accession name
2-A
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
35
1-A TARS #
17164
Accession name
1-A
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
36
SECOND BATCH 3-A TARS #
17154
Accession name
3-A
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
37
9-A TARS #
17167
Accession name
9-A#
Group
Cavendish
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
# Accession is incorrect based on microsatellite profile and general clustering
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
38
2390 TARS #
17165
Accession name
2390
Group
Synthetic Hybrid
Ploidy/Genome
4X/AAAA
Microscopy
AAAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
39
BLUE TORRES STRAIGHT ISLAND TARS #
18018
Accession name
Blue Torres Straight Island
Group
Ney Mannan
Ploidy/Genome
3X/ABB
Microscopy
ABB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
40
CACAMBOU TARS #
18020
Accession name
Cacambou
Group
Bluggoe
Ploidy/Genome
3X/ABB
Microscopy
ABB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
41
CARDABA HONDURAS TARS #
17822
Accession name
Cardaba Honduras
Group
Saba
Ploidy/Genome
3X/ABB
Microscopy
ABB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
42
CONGO 300 TARS #
16513
Accession name
Congo 300
Group
Plantain (False Horn)
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
43
DWARF ORINOCO TARS #
17397
Accession name
Dwarf Orinoco
Group
Bluggoe
Ploidy/Genome
3X/ABB
Microscopy
ABB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
44
DWARF SUPERPLANTAIN TARS #
16507
Accession name
Dwarf Superplantain
Group
Plantain (French)
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
45
FHIA-17 TARS #
18058
Accession name
FHIA-17
Group
Synthetic Hybrid
Ploidy/Genome
4X/AAAA
Microscopy
AAAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
46
FRENCH TYPE DOMINICAN TARS #
17816
Accession name
French Type Dominican
Group
Plantain (French)
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
47
GIPUNGUSI TARS #
18023
Accession name
Gipungusi
Group
Bluggoe
Ploidy/Genome
3X/ABB
Microscopy
ABB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
48
HUA MOA TARS #
17824
Accession name
Hua Moa Popoulu
Group
Maia Maoli Popoulu
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
49
HY BRAZILIAN TARS #
17378
Accession name
Hy Brazilian
Group
Pome – Tall
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
50
IGNAMICO TARS #
17409
Accession name
Ignamico
Group
Mutika/Lujugira
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
51
KATUAI VUNALAIR TARS #
17412
Accession name
Katual Vunalair
Group
Cultivated diploid
Ploidy/Genome
2X/AA
Microscopy
AA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
52
LACKNAU P.I.23472 TARS #
16516
Accession name
Lacknau P.I.23472
Group
Laknao
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
53
MONTHAN TARS #
18024
Accession name
Monthan (MIA 34906)
Group
Monthan
Ploidy/Genome
-
Microscopy
ABB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
54
NCHUMBAHAKA TARS #
17408
Accession name
Nchumbahaka
Group
Mutika/Lujugira
Ploidy/Genome
3X/AAA
Microscopy
AAA
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); right: infected plant with FocTR4
55
PA 03-22 TARS #
18050
Accession name
PA 03-02#
Group
Synthetic Hybrid
Ploidy/Genome
4X/AAAB
Microscopy
AA
††
††
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
# Accession is incorrect based on microsatellite profile and general clustering †† Ploidy and/or genomic composition changed from previously reported
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
56
PELIPITA COSTA RICA TARS #
17818
Accession name
Pelipita – Costa Rica
Group
Pelipita
Ploidy/Genome
3X/ABB
Microscopy
ABB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
57
PV 42-81 TARS #
18054
Accession name
PV 42-81
Group
Synthetic Hybrid
Ploidy/Genome
4X/AAAB
Microscopy
AAAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
58
PV 42-320 TARS #
18055
Accession name
PV 42-320
Group
Synthetic Hybrid
Ploidy/Genome
4X/AAAB
Microscopy
AAAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
59
RAJAPURI TARS #
16522
Accession name
Rajapuri
Group
Pome – Short
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
60
SEÑORITA TARS #
17410
Accession name
Señorita
Group
Pome – Tall
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
61
SH-3640 TARS #
08047
Accession name
SH-3640
Group
Synthetic Hybrid
Ploidy/Genome
3X/AAB
Microscopy
AAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); middle and right: two infected plants with FocTR4
62
TMP X 1621-1 TARS # Accession name
TMP x1621-1
Group
Synthetic Hybrid
Ploidy/Genome
4X/AAAB
Microscopy
AAAB
Acquisition date Donor country
Puerto Rico/USDA
Testing date
10-7-2014 to 20-8-2014
Left: Healthy plant and corm (water control); right: infected plant with FocTR4
63