Workflow Inputs qtl_end_position
qtl_start_position
chromosome_name
genes_in_qtl mmusculus_gene_ensembl remove_uniprot_duplicates
remove_entrez_duplicates
create_report
merge_entrez_genes
merge_reports
merge_uniprot_ids REMOVE_NULLS_2
remove_Nulls
add_uniprot_to_string
add_ncbi_to_string
Kegg_gene_ids
Kegg_gene_ids_2
concat_kegg_genes regex_2
split_gene_ids
merge_kegg_references
split_for_duplicates remove_duplicate_kegg_genes Get_pathways Workflow Inputs regex
gene_ids
split_by_regex lister get_pathways_by_genes1 Merge_pathways concat_ids concat_gene_pathway_ids Merge_gene_pathways
pathway_desc Merge_pathway_desc
Workflow Outputs pathway_genes
merge_genes_and_pathways kegg_pathway_release binfo
pathway_desc
remove_pathway_duplicates
pathway_ids
merge_pathway_list_1
gene_descriptions
merge_genes_and_pathways_2
merge_pathway_desc
merge_pathway_list_2
merge_gene_desc
species
merge_genes_and_pathways_3
remove_pathway_nulls
remove_pathway_nulls_2
remove_nulls_3
getcurrentdatabase
Workflow Outputs kegg_pathway_release
merged_pathways
Workflow Outputs
Workflow Inputs
An_output_port
An_input_port
pathway_descriptions
A_local_service
pathway_ids
Beanshell
gene_descriptions
A_Soaplab_service
kegg_external_gene_reference
String_constant
report
ensembl_database_release
A_Biomart_Service
Figure 1.
A Taverna workflow that connects several internationally distributed datasets to identify candidate genes that could be implicated in resistance to African trypanosomiasis [11].
THE FOURTH PARADIGM
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