Stop the Rot
Stop the Rot: A National Collaboration to Research, Combat Bacterial Diseases of Onion By Heather MacKay and Lindsey du Toit, Washington State University
he Stop the Rot project team has completed the first full season of field and lab work. The goal of the Stop the Rot project is to develop practical, economically sound strategies for bacterial pathogen detection and management that will improve profitability and sustainability of onion production. It is vital that the research addresses industry priorities and provides tools that will be useful for growers. Findings from stakeholder surveys in our first year of research confirmed that bacterial diseases and economic losses due to onion rots are a significant economic issue for the onion industry. All the groups surveyed agree that there is no single highly effective management strategy for reducing economic losses and that a combination of diagnostic tools, treatments and management strategies will be needed.
Understanding Bacterial Pathogens
From late 2019 through 2020, researchers across six onion growing regions in the U.S. collected symptomatic onion leaves
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Christy Hoepting with Cornell Extension cuts open onions to check for bacterial rots. Photo courtesy Christy Hoepting, Cornell Extension
and bulbs from fields and storage facilities, from which bacteria were isolated for identification and pathogenicity testing on onion. The purpose of this national bacterial survey, which will be repeated in the 2021 and 2022 seasons, is to get a snapshot of the many types of bacteria present in onion crops across the U.S. While we know Burkholderia, Pantoea, Enterobacter and Xanthomonas are the most common genera of bacteria that cause diseases of onion, and our first year’s bacterial survey turned up these “usual suspects” around the country, we found a surprisingly broad diversity of other bacterial genera associated with symptomatic onion leaves and bulbs. The surveys will help us understand which bacteria are prevalent in different onion production regions and what their roles might be in the progression of bacterial diseases of onion. Genetic research will be completed with selected pathogenic bacteria from the surveys with the goal of understanding which genes enable these bacteria to cause diseases of onion. Our team is developing molecular diagnostic tools to allow rapid identification of the pathogenic bacteria, which will help growers respond more effectively to infections in their crops. In the 2021 season, we will be testing methods for detecting onion pathogenic bacteria in soil, irrigation water and other potential sources of inoculum.
Managing Bacterial Diseases in the Field
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Onion World • May / June 2021
Field trials were designed by this team to assess the efficacy of a range of practices and treatments on bacterial diseases, many of which are currently used by growers. The last evaluations of onions in storage from these trials were obtained in February 2021, so we are updating the trial reports with these data to share with onion stakeholders.