Prof Frank Sargent, CLS ‘Interdisciplinary research projects for undergrads’

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Frank Sargent Division of Molecular Microbiology College of Life Sciences




Americas

Europe

Asia

Regional Finals - October World Championship Jamboree - November


Conceive a Novel Project Raise Funds & Build a Team Model, Predict & Test Hypotheses Design, Conduct & Interpret Experiments Consider Safety & Ethics Collaborate with other Scientists Deposit Data in Public Repositories Engage the Public / ‘Human Practices’ Present Posters & Seminars at Conferences Win Prizes and/or Take Criticism All in 10 weeks


Computing

Maths Biology Physics

Life Sciences

Maths

 advertise widely in Semester 1, collect applications  interview students in January  value science communication skills as highly as academic prowess



Our problem: Algal Blooms  Explosion

in the growth of blue-green algae (cyanobacteria)

 Production of toxins  Hazardous to humans, pets and livestock.  Local problem  E.g. Reservoirs, lakes/lochs  Global

problem

Clatto reservoir, Dundee


Liver toxin: Microcystin


PP1 & Microcystin Microcystin

 Binds

covalently to Protein Phosphatase 1

 Blocks  PP1

the active site

is an essential regulatory protein

Goldberg et al (1995) Nature 376, 745-753. PDB code: 1FJM


Our idea: a biological ‘ToxiMop’ PP1

PP1

PP1

PP1 PP1

PP1

PP1

PP1 (sp)

PP1

PP1 PP1 PP1

PP1

PP1

PP1

PP1

PP1 PP1

PP1

PP1

PP1


Extracellular space

Periplasm

Cytoplasm


ToxiMop ELISA No Cells

X

Vector only

CytoplasmicPP1

ToxiMop Cells

0.26 nM Microcystin


Biological Detector Light

Temperature

Humidity

pH

Dissolved O2

Webcam


The Future of ToxiMop ď‚ž Moptopus

Mk. II


Raw data from the buoyancy assay



Dundee: European Champions

60 teams including Edinburgh, Imperial, UCL, Leeds, Kent, Newcastle, Manchester, Leicester, Westminster, Exeter, East Anglia, York


Dundee: World Champions

71 teams including Harvard, MIT, Peking, Yale, Cornell, Stanford-Brown, Tokyo Tech, Sydney.


The future of interdisciplinarity?


Frank Sargent Division of Molecular Microbiology College of Life Sciences


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