BINFSOC STUDENT GUIDE 2022

BINFSOC

A C areers G uide To Bioinformatics.

2022

ATTGCCTTTAGATUNSW ACTBIOINFORMATICS GCCGATCGASOCIETY_

Page 1

B I N F

Page 2

0x01000010 0x01001001 0x01001110 0x01000110

What is BINF?

Bioinformaticsisoneofthemostexcitingeldsonthe forefrontofinnovation.Whilstthesix-syllablewordhasmost peoplescratchingtheirheads,throughthisguideweaimto demystifytheindustryandhighlighttheopportunitiesavaila atUNSWtomakethemostoutofyourdegree.

SowhatisBioinformatics?Bioinformaticsisakeydiscipline thatappliesthefundamentalsofthelifesciences, mathemat icsandengineeringtocomputationallyanalyseandprocess therapidlygrowingrepositoryofinformationdevelopedfrom genetics,biotechnologyandbiochemistry.AtUNSW,through studyingthecoreconceptsofsoftwareandinformation tech nologiestoextract,interpret,analyseandutilisedataand geneticinformation,studentsapplythemethodsofcomputer sciencetoachievethegoalsoflifesciencesspace.

WhetheryouareenrolledintheScienceorthe - Engineer ingstream,orevenifyouarejustinterestedinthesector, thisguidewillprovideyouwithacomprehensivebreakdown ofwhatBioinformaticslookslikeatUNSW,andthedifferent pathsthatyoucanpursueasyoubeginyourcareer.

Page 3

FOREWORD 2021 marks the 20th anniversary of the Bioinformatics Engineering degree at UNSW. Graduates from the program have gone on to

degrees are rich in foundation courses as bioinformaticians must

Page 4

DESN2000) is an important avenue for engineers to meet f supervisors and even employers, so, even though it is lab a level 2 course, it is important to leave this course ti impress your project customer.

Some of the dedicated bioinformatics courses throughou

areas of bioinformatics. Many of these guest lecture available to supervise student projects for the thesis industrial training, so do not hesitate to contact the common destination for thesis projects and industrial t are the various medical research institutes around Sydn

and it can pay to be proactive and contact investigators

program as they often have made previous contact with pot supervisors and can provide suggestions.

and technology but currently, it still can be a niche bioinformatics engineering degree was deliberately desig just in life science research but also in a wide range of careers.

— Dr Bruno Gaeta

Head of UNSW Bioinformatics

Page 5

BIOTECHNOLOGY AND BIOMOLECULAR SCIENCES HEAD OF SCHOOL ADDRESS Bioinformatics has become an increasingly critical component of research in the life sciences. This has been driven by the growth of technologies used in biological investigations that create large amounts of data, such as DNA and RNA sequencing, mass spectrometry, single cell sequencing, high-throughput functional screens, remote sensing, and laboratory automation systems.

Together with this, the internet has seen the growth of huge databases of biological data that can add a further dimension to research questions. As a result, most research projects in the life sciences typically involve analysis of big biological datasets at some point. This is where bioinformatics skills can really bring life. In the past, getting the data was often the trickiest part of an experiment; now it much more tends to be the ability to handle and analyse the data.

For students excited by the bioinformatics space and thinking of making a career from it, below are a few things I’ve learned and seen along the way both from the perspective of both my role as bioinformatics researcher for a number of years and as a supervisor.

Page 6

1. Don’t forget about the wet The lab. data you analyse is only as good a the experiment that generated them. It’s really important to h understanding of what’s gone on in generating a dataset. Some h experience in the wet lab is the best way to understand the ar limitations.

2.

Decide whether you want to be an engineer or There a scientist. are two broad types of bioinformatician; those who really understands

(“engineer”) and those that use programming as a tool to answer questions (“scientist”). There’s no right or wrong in this, it re to what excites you and what role you you ultimately want to be engineering path, it’s valuable to do more courses in computer s software architecture, while the scientist path, will have a gr biology courses. It’s really hard to be both, so it’s an import consider carefully. It’s a good idea to talk to people in both s a feeling for how the roles differ and which is best for you.

3. Learn by doing.

Bioinformatics is a really diverse area and the r relevant skills is enormous. So although it can be useful to do s online courses and tutorials to pick up some basic skills, the learn is to have a problem that needs solving; whether that’s imp

a big dataset. So, I would urge anyone interested in pursuing bi to engage in a research project whenever they keen; whether that’s an internship or Honours program – it will really give you a fee skills you need to get productive.

4. Ask for help!

Bioinformatics can be really tricky. As with much of there are few rules or guidelines that will tell you the right to do something, so talking to peers and the community is the to know whether or not you’re on the right track and, importan inventing the wheel. Run your results past your team often and thi about controls – observations in bioinformatics have a tendency exciting, when they’re actually just experimental artefacts or id of biology!

I hope this is advice is useful. Bioinformatics is one of the most valued disciplines in the life sciences and can be a really reward

— Professor Marcel Dinger Head of UNSW BABS

Page 7

Course information.

Page 8

Starting rst year university is a li dauntingandthedifferentcoursescanb confusing,sohereisanoverviewofwhat toexpectwhenstudyingBioinformatics.

During First year, courses will be aimedtoprovideyouwiththefundamentalknowledgeformostSecondandThird yearcourses.Abioinformaticsstudentwi study a range of courses like molecular

ittle be

ill r

andcellbiology,chemistry,mathematics bonding and interactions, equilibri and computer science courses. If you and thermodynamics. However, if you did not study a science subject for th have done science subjects for HSC, a lot of topics will be revision and an ex- HSC, dont fret, as courses will either be taught assuming you have no prior tensionofknowledgeyoualreadyknow.

The rst biology course (BABS1201) knowledge, or there is a prerequisit will focus on cell structure and function. coursetotake.

Chemistry courses will be an extension from HSC chemistry and will involve learningaboutperiodictrends,chemical

Page 9

The engineering side of bioinformatics will require mathematics, engineering, and computer science courses.

Page 10

Engineering Stream

To access detailed information about each of the core courses as part of the Bioinformatics Engineering Degree, check out the Handbook - Bioinformatics Engineering.

While the maths is not extensive, it is enough to help you understand and appreciate a lot of the detail behind some methods and algorithms that are introduced in higher level computer science courses, alongside those applied in bioinformatics.

There are also some general core engineering courses which develop your design thinking, report writing, and project management skills. In these courses, you have the chance to use some of the standard technologies and practices adopted in engineering industries in general. In the past, these courses have been primarily project-based, with DESN2000 being run separately across different engineering disciplines.

Page 11

Year Year

1

2

Course Code

Course Name

MATH1131 or MATH1141

Mathematics 1A Higher Mathematics 1A

MATH1231 or MATH1241

Mathematics 1B Higher Mathematics 1B

MATH1081

Discrete Mathematics

MATH2801 or MATH2901

Theory of Statistics Higher Theory of Statistics

For some mathematics courses there is an option to choose the higher equivalent in which the same content is taught, but at a greater level of detail.

The core maths courses will give you a theoretical background in calculus, linear algebra, statistics, and discrete mathematics, which will be applied throughout the core courses, as well as any computing electives you take down the line.

Table 1: Core mathematics courses

The DESN2000 course is a great opportunity to get in touch with other students in the Bioinformatics Engineering stream and to be able to work on a term-long, biology-based software engineering project and apply the engineering practices and methodologies taught alongside.

While second year students can enrol, it is recommended that you take the course in third year, given the computing knowledge assumed.

Project choices for DESN2000 may vary year to year, however, they are a good opportunity to work with biological or biomedical data. The offering in 2021 also involved working with industry and researchers outside of the university to guide your group project

Year

Course Code

Course Name

1

DESN1000

Introduction to Engineering Design and Innovation

2

DESN2000

Engineering Design and Professional Practice

Table 2: Core engineering courses

Page 12

The core computing courses give you a broad foundation in computer science before building upon these fundamentals as you move through the course levels. Since there is no coding knowledge assumed when you commence the degree, COMP1511 will equip you with the skills to be able to set up what is needed to start coding. The core computing courses in the Bioinformatics degree are:

Year

Course Code COMP1511

1

2

COMP1521

Course Name Programming Fundamentals Computer Systems Fundamentals

COMP1531

Software Engineering Fundamentals

COMP2041

Software Construction: Techniques and Tools

COMP2511

Object-Oriented Design & Programming

COMP2521

Data Structures and Algorithms

COMP3311

Database Systems

COMP3121

Algorithms and Programming Techniques

COMP4920

Professional Issues and Ethics in Information Technology

3

4

In these courses, you will also be introduced to some universal concepts in programming that will help you to translate a problem into a solution in computer code. This is a very valuable skill for a bioinformatics engineer. These concepts are independent of the programming language you use in the course and can help you to quickly learn new programming languages that may be used in other courses.

It is useful to be aware that courses subsequent to COMP1511 focus less on how to code but rather better ways to code, how coding works, and applications of coding, just to name a few.

Table 3: courses

Core

computing

Page 13

Science Stream

Whilst studying Bioinformatics in the Engineering and Science Faculty have many similarities, through undertaking Bioinformatics as a major in Science, you are able to focus more on the underlying biological theory in the field, and less on the computational applications. This is reflected in the different mandatory courses required of students enrolled in the Science faculty.

As of 2021, you can major in Bioinformatics through the following programs: Bachelor of Science / Bachelor of Science (Honours) Bachelor of Science (International) Bachelor of Advanced Science (Honours) Bachelor of Science and Business The structure for all of these courses are quite similar. However, let’s dive deeper into one degree to get a gist of what you might expect!

Page 14

Bachelor of Science (with and without Honours)

TYPICAL DURATION: 3 years + 1 year (if you plan to take Honours) STRUCTURE: You can choose to do a single or double degree. For both types, there are 26 majors to choose from including Bioinformatics. You can choose 1-2 majors or 1 major and 12 minors.

Single Degree

Double Degree

12 courses related to your major of choice (72 UOC*)

12 courses related to your major of choice (72 UOC)

6 Science Elective courses (36 UOC)

4 Science Elective courses (36 UOC)

4 Free Elective courses (24 UOC)

16 courses for your other degree.

2 General Education courses (12 UOC).

Your second degree could be:

Please note that if you do decide to take a double degree in Science and Engineering, you will be unable to major in Bioinformatics for BOTH programs. Only one program is allowed.

Table 4: Program structure for a single versus double degree

Actuarial Science Arts Commerce Economics Education Engineering (Hons) ...and more!

The science side of bioinformatics will enable you to explore various fields during your first year at uni and eventually help you to find your niche in second and third year. Similar to the Bachelor of Engineering degree, you will study the same core mathematics courses, as seen in Table XX. However, in the Science major there are no compulsory engineering courses, and only three compulsory computational courses, namely COMP1511, COMP2041 and COMP2521. Distinct courses that you will take as a Science major are included in Table 5.

Page 15

Year Year 1

Course Code

Course Name

BABS1201

Molecules, Cells and Genes

CHEM1021 or CHEM1041

Chemistry 1B Higher Chemistry 1B

BIOC2101

Principles of Biochemistry (Advanced)

BIOC2201

Principles of Molecular Biology (Advanced)

BABS3121

Molecular Biology of Nucleic Acids

Course Code

Course Name

1

BINF2010

Introduction to Bioinformatics

3

BINF3010

3

BINF3020

It’s a good idea to explore as many options as earlier into your degree. By the end of first year, you will have the chance to declare your major and will be able to change it throughout your degree. However, it is best to explore early so you don’t end up taking additional courses!

Table 5: Core science courses

2

3

Year

Applied Bioinformatics

You will also have the opportunity to complete courses specific to Bioinformatics.

Table 6: Core bioinformatics courses

Computational Bioinformatics

It’s also a good idea to plan out your degree. Click on this link to see a sample degree template: Bachelor of Science (Major in Bioinformatics) and for other science degrees, click here: UNSW Science Undergraduate Degrees.

To access detailed information about each of the core courses as part of the Bioinformatics Science Degree, check out the Handbook - Science (Bioinformatics).

Page 16

It's difficult navigating when to study which courses.

2

Page 17

Timelines of Completion

Navigating when to study the right courses, particularly considering minimum units of credit required and prerequisites can be difficult. To ease the decision making process, refer to one of the recommended timelines of completion for each degree type.

Disclaimer: The progression of a degree and the courses taken are always subject to change, so this should always be confirmed in regard to the handbook (https://www.handbook.unsw.edu.au/undergraduate/specialisations/2021/BINFB1?year=2021 ) ENGINEERING

First year (Level 1 Core Courses) 1.

2.

3.

4.

5.

6.

7.

8.

BABS1201 COMP1511 COMP1521 COMP1531 DESN1000 CHEM1011/CHEM1031 MATH1131/MATH1141 PHYS1131/PHYS111/PHYS1121

Second Year (Level 1 Core Courses and Level 2 Core Courses) 1.

2.

3.

4.

5.

6.

7.

8.

Page 18

MATH121/MATH1241 MATH1081 BINF2010 BIOC2201 COMP2041 COMP2511 COMP2521 DESN2000

Third Year (Level 2 Core Courses and Level 3 Core Courses and Discipline Electives) 1.

2.

3.

4.

5.

6.

7.

8.

MATH2801/MATH2901 BABS2264/BABS2204/BABS2202/BIOC2101/MICR2011 BABS3121 BINF3010 BINF3020 COMP3121 COMP3311 Discipline Elective

Fourth Year (Level 4 Core Courses and Discipline Electives) 1.

2.

3.

4.

5.

COMP4920 COMP4951 COMP4952 COMP4953 Discipline Elective

Page 19

SCIENCE

First Year (Level 1 Core Courses) 1.

2.

3.

4.

5.

6.

7.

BABS1201 COMP1511 COMP2521 MATH1131/MATH1141 MATH1231/MATH1241 CHEM1011/CHEM1031 CHEM1021/CHEM1041

Second Year (Level 2 Core Courses) 1.

2.

3.

4.

5.

BINF2010 BIOC2101 BICO2201 COMP2041 MATH2801/MATH2901

Third Year (Level 3 Core Courses) 1.

2.

3.

4.

Page 20

BABS3121 BABS3281 BINF3010 BINF3020

Page 21

Recommended electives

Throughout your degree, you will often be able to choose your own electives or courses to study. If you’re not sure how to go about this process, use the below guide to recommend potential electives based on your enjoyment of the mandatory subjects that you will have already studied.

If you liked BIOC2201 Principles of Molecular Biology (Advanced) Topic Nucleic Acids DNA Replication PCR Transcription/Translation Recombinant Techniques Stem Cells

Elective Suggestions BABS3121 Molecular Biology of Nucleic Acids detailed analysis of gene structure and function

BABS3281 Molecular Frontiers Explore molecular biology techniques commonly used in biomedical research

BABS3061 Medical Biotechnology Discover the principles and techniques leading to medical innovations in biomolecular therapies

Protein Structure

Gene Expression

Overall

BIOC3111 Molecular Biology of Proteins Understanding the relationships of proteins, their structure and function.

Discussion of the latest techniques of protein characterisation.

BABS2204 Genetics Explore gene structure and transmission, genetic variation, regulation of gene activity, genetic variation, mutation, and evolution Note: This is a Core Course Elective & Prerequisite to some Level 3 electives

BIOC3271 Molecular Cell Biology 2 Investigates how cells develop, operate, communicate, construct multicellular organisms, control their activities and the techniques used to understand these processes.

BIOC3261 Human Biochemistry Explores advanced aspects of biochemistry relevant to humans.

Addresses specific clinical problems and provides a background of normal metabolism.

Page 22

If you liked BABS1201 Molecules, Cells and Genes Topic

Elective Suggestions BABS3081 Bacteria and Disease

Cell biology & Cell Architecture

Gain an understanding of the pathogenic mechanisms used by bacterial pathogens to cause human disease. Alongside Epidemiology and strategies used to control and prevent these infectious diseases

Genetics (Gene expression, Laws of Inheritance, population genetics)

BABS2204 Genetics Gene structure and transmission, genetic variation, regulation of gene activity, genetic variation, mutation and evolution

If you liked BABS2204 Genetics Topic

Elective Suggestions

Population genetics

Covers genome structure, genomics (sequencing), genome variation (mutation, recombination, and genetic drift) and applications of genomics.

BABS3291 Genes, Genomes and Evolution

Evolution of Genes and Traits Overall

BABS3021 Microbial Genetics Microbiology, molecular biology and genetics of bacteriophages, bacteria, and yeast. Mechanisms of gene transfer, gene regulation.

BABS3151 Human Molecular Genetics & Disease Explores the principles and applications of understanding human genetic makeup, human evolution, development, and diseases.

If you liked MICR2011 Microbiology 1 Topic

Elective Suggestions

Microbes in Biotechnology and Synthetic Biology

BABS3200 Synthetic Biology

Virology

MICR3061 Viruses and Disease

Gain insight into the assembly and design of interchangeable biological parts

Explore the biology of human and animal viruses and properties that enable their persistence and spread

Environmental Microbiology Microbial Processes and Interactions

MICR3071 Environmental Microbiology Learn about the role of microbes in marine, freshwater and terrestrial ecosystems

Page 23

If you are interested in Biotechnology: BABS3031 Covers bioprocessing and economic principles involved in the operation, development, and design of large-scale biotechnology-based processes

BABS3071 Commercial Biotechnology Covers aspects of biotechnology that are critical in the industry such as funding for R&D and Intellectual Property.

Page 24

School of Computer Science and Engineering cse.unsw.edu.au

If you liked…

Elective Suggestions

COMP1521

COMP3231 Operating Systems Involves the organisation and services of operating systems. Process, memory, storage management.

COMP1531

COMP6080 Web Front-End Programming Introduces the fundamentals and advanced techniques of programming for the web front-end in JavaScript.

COMP2041

COMP6714 Information Retrieval and Web Search COMP3141 Software System Design and Implementation Investigate the use of mathematically structured programming to deliver software that is more reliable, more verifiable, and more elegant

COMP2511

COMP3131 Programming Languages and Compilers Covers the fundamental principles in programming languages and implementation techniques for compilers (emphasis on compiler front ends).

COMP2521

COMP3411 Artificial Intelligence COMP3153 Algorithmic Verification Learn about several automatic verification techniques, the algorithms they are based on, and the tools that support them

COMP3121

COMP4121 Advanced Algorithms Continuation of the 3121 algorithms. Covers randomised algorithms and data structures.

COMP6741 Algorithms for Intractable Problems Explore algorithms for solving intractable computational problems (NP hard problems)

COMP3311

COMP9315 Database Systems Implementation examination of techniques used in the implementation of relational, object-oriented, and distributed database systems

COMP9318 Data Warehousing and Data Mining Introduction to the foundation of data warehousing, the theories of various data mining techniques and the practises of developing data mining applications

Page 25

Progressioncheck Check Progression A Program Progression Check is a formal conrmation of academic progress. It advises students on the courses remaining to meet program requirements. This service is recommended for students in their nal year (approaching graduation), to ensure they areontrackforgraduation.YoucanalsoutiliseProgramChecklists/ ProgressionChecksheetsasanalternatemethodoftrackingtheremainingcoursesthatyouneedtocomplete.

IfyousubmitaProgramProgressioncheck,expecttoreceivearesponsewithinapproximately5workingdays.

HowtoapplyforaProgramProgressionCheck?

1.LogintotheUNSWStudentPortalWebFormswebsite https:/portal.insight.unsw.edu.au/ppc/ 2.Followthestepstocompletetheform

Note:IfcompletingaDoubleDegree,youmayselectwhichfaculty yourrequestwillbesentto.

Page Page 26 26

Aa Tt at Page Page 27 27

G Gg g Cc C c Page2828 Page

Transferring Streams Transferring streams Once you get the chance to immerse yourself in the university cultureandundergoafewcourses,youmayfeelthatthedegreeormajor that you chose no longer interests you. So, what if you would like to changestreamsormajors?Noworries.Justfollowsthesesteps:

Howto How toapply applyfor foraProgram a StreamProgression Transfer? Check?

1.

After logging into myUNSW , nd Stream Declaration on the left handsideofthescreenandunder theServices Online heading.

2. Once you click on the heading, another page should load. From here,youwillbeabletoviewyourcurrentstream.Nowallyouhave ChangeStreams ”. todoisclick

WHENCANICHANGEMYSTREAM? Youcanchangeyourstreamwheneveryoulikeexceptfromthestart ofWeek4tillCensusdateofthecurrenttrimester.Ifyouareaboutto graduate,thenyouarenolongereligibletochangeyourstream.

WHATSTREAMSDOESMYPROGRAMOFFER? Tocheckforthis,itisagoodideatocheckyourfacultyStreamInformationDeclarationPage.NotethatnotallScienceprogramsarein cludedintheStreamDeclarationService.Ifitisnotincluded,youwil needtosubmitaMajorDeclaration You . can form alsoconsultyour handbookandProgramAuthorityformoreinformation.Someuseful links:StudentNucleus and Hub CurrentStudents .

Page2929 Page

EXCHANGE

With COVID restrictions constantly uctuating, it can be difcult to predict when borders are open to embark on exciting opportunities like exchange. Exchange is known to have many positive implications in terms of both personal growth and employability. you have the opportunity to choose from a range of courses, in 20 plus countries some of which may not even be on offer at UNSW. The list of universities that offer exchange for engineering can be found here.

HOW IT WORKS If you choose to undertake an exchange program, you will continue to be enrolled as a full time student at UNSW. The credits (up to a maximum of 24 credits per half year) that you gain during exchange will be added to your UNSW degree. However, the mark is not added to your Academic Transcript, rather you get a satisfactory grade. Additional time is not added to your degree for undertaking exchange.

If you are interested, you are required to join the Moodle page, where you will have access to the important dates related to exchange, in addition to a software that matches the courses offered in partner universities to their UNSW-equivalent.

Page 30

COSTS On exchange, you are required to pay for accommodation, travel and food. It is recommended by the Student Exchange UNSW team that you have at least $3000 available per month. If you have a scholarship or traineeship, these will most likely continue when you are on exchange, but best to discuss this matter with your sponsoring body toconrmthedetails.

Generally, you are not expected to pay tuition to the partner university, instead you will continue to pay UNSW. However, some universitiesmayhaveadditionalcoststhatneedtobesatised.

ELIGIBILITY General requirements: • Need to have at least a credit average WAM, although some universities may have a higher requirement. If your WAM is below a credit average, it is highly recommended to talk to Exchange Advisors. (https://student.unsw.edu.au/globalcontacts) • Have at least 18 credits remaining in your degree at the start of your exchange program • Only exchange to a UNSW partner institution

• If language prociency is required, you need to have studied t language for at least 2 years at a university level. You may be eligible if you have studied the language signicantly out university or at a high school level. Some universities may require youtositalanguageprociencytestpriortoexchange.

Page 31

Exchange is the perfect way to experience living instead of just visiting a country while you are still a student. It’s an opportunity to immerse yourself in a different culture, put yourself out of your comfort zone and make unique memories. No one I’ve talked to has ever regretted their exchange which I think says a lot!

My biggest tip: as the UNSW BINF courses are quite specic i.e. BINF2,01BINF3,01BINF302 I would not rec ommend doing them on exchange as the material in these courses are cumulative. You have no idea if the host university you go on exchange will teach the same material as in our BINF courses. I would also avoid the same for subjects that are prerequisites for later courses unless you are prepared to have a bit of a learning curve when doing said later course. The best subjects to do on exchange are your electives! e.g. the four discipline electives COMP/BABS3xxx or higher, and BABS electives and GENEDs.

If you’re up for a little bit of organising and hunting for opportunities, doing an internship or being a summer research student overseas would also be a great experience and help fulll your industrial training requirements for engineer stream students. This would require you to make sure your exchange period lines up with the summer break of your host university, and of course make it back in time for term start at UNSW at the conclusion of your exchange.

— Chelsea Liang Singapore Exchange Student

Page 32

EXCHANGE TESTIMONIES.

“

Saving your ‘generic’ courses such as professional electives is always a good way to prepare. Figure out which country and why you want to go. These questions are important in the selection process.

— Laura Wratten

New Colombo Plan Scholarship Student

Page 33

BioinformaticsCourseSpecic ExchangeProgram Some UNSW courses do not have corresponding courses offered at partner universities. But a compiled list of UNSW courses and the relevant courses are partner universities can befoundbelow:

LEVEL 1 CORE COURSES COMP1511 - Programming Fundamentals LOCATION

RELEVANT COURSES

󰑔

PIC 10A: Introduction to Programming

UNIVERSITY OF CALIFORNIA, USA

COMP1521 - Computer System Fundamentals LOCATION

RELEVANT COURSES

󰑔 UNIVERSITY OF

CIS240: Introduction to computer architecture

PENNSYLVANIA, USA

󰑔 UNIVERSITY OF PENNSYLVANIA, USA 󰑔 UNIVERSITY OF FLORIDA -

CIS 240: Introduction to Computer Systems CDA3101: Introduction to Computer Organization

WARRINGTON COLLEGE OF BUSINESS ADMINISTRATION, USA

󰎩

SHANGHAI JIAOTONG UNIVERSITY, China

󰐵 󰑔 GEORGIA INSTITUTE OF

NANYANG TECHNOLOGICAL UNIVERSITY, Singapore

TECHNOLOGY, USA

Page 34

EI338: Computer Systems Engineering

CZ1006: Computer Organization and Architecture CS 2110: Computer Organisation and Programming

COMP1531 - Software Engineering Fundamentals LOCATION

󰎩 󰐵 NANYANG TECHNOLOGICAL

SHANGHAI JIAOTONG UNIVERSITY, China

RELEVANT COURSES EE312: Software Engineering CZ2006: SOFTWARE ENGINEERING

UNIVERSITY, Singapore

BABS1201: Molecules, Cells and Genes LOCATION

󰑔 UNIVERSITY OF FLORIDA - COLLEGE OF ENGINEERING, USA

RELEVANT COURSES -

BSC2010: Integrated Principles of Biology 1 BSC2010L: BSC 2010L -Integrated Principles of Biology I Laboratory

󰏅 UNIVERSITY OF BIRMINGHAM, UK 󰏅 SWANSEA UNIVERSITY, UK 󰑔 PENNSYLVANIA STATE UNIVERSITY,

BIO108: Molecular and Evolutionary Biology

󰐘 NORWEGIAN UNIVERSITY OF

BI3016: Molecular Cell Biology

󰐵 NATIONAL UNIVERSITY OF

LSM1106: Molecular Cell Biology

󰐵

BG1131: Molecular Cell Biology for Biomedical Engineers

03 23318: LC Cell Biology & Physiology

BME 201: Fundamentals of Cells and Molecules

USA

SCIENCE & TECHNOLOGY, Norway

SINGAPORE, Singapore

NANYANG TECHNOLOGICAL UNIVERSITY, Singapore

󰎟 MCGILL UNIVERSITY, Canada 󰑔 GEORGIA INSTITUTE OF

BIOL 112: Cell and Molecular Biology BIOL 1510: Biological Principles

TECHNOLOGY, USA

󰑔 DREXEL UNIVERSITY, USA 󰏦 AKITA INTERNATIONAL UNIVERSITY, Japan

BIO 122: Cells and Genetics -

BIO100: Introduction to Biology BIO105: Biology Laboratory

Page 35

MATH1081 - Discrete Mathematics LOCATION

�� �� UNIVERSITY OF VIRGINIA, USA �� UNIVERSITY OF PENNSYLVANIA, USA �� UNIVERSITY OF MICHIGAN, USA �� UNIVERSITY OF EDINBURGH, UK WESTERN UNIVERSITY, Canada

�� UNIVERSITY OF EDINBURGH, UK

RELEVANT COURSES -

CS 2214A: Discrete Structures for Computing CS 2214B: Discrete Structures for Computing

CS2102: Discrete Mathematics MATH340: Discrete Mathematics I EECS 203: Discrete Mathematics INFR08023: Discrete Mathematics and Mathematical Reasoning INFR08023: Discrete Mathematics and Mathematical Reasoning

�� UNIVERSITY OF CONNECTICUT, USA

MATH1031Q: Elementary Discrete Mathematics

�� UNIVERSITY OF COLORADO,

MATH 2001: Introduction of Discrete Mathematics

�� UNIVERSITY OF COLORADO,

APPM 3170: Discrete Applied Mathematics

BOULDER, USA

BOULDER, USA

��Many more…

DESN1000 - Introduction to Engineering Design and Innovation LOCATION

�� MCGILL UNIVERSITY, Canada �� GE3 - DTU - TECHNICAL UNIVERSITY

RELEVANT COURSES MECH 289: Design Graphics 41603: 41603 Engineering design and problem solving

OF DENMARK (ENGINEERING ONLY), Denmark

CHEM1031 - Higher Chemistry 1A: Atoms, Molecules and Energy LOCATION

�� GEORGIA INSTITUTE OF TECHNOLOGY, USA

Page 36

RELEVANT COURSES CHEM 1310: General Chemistry

CHEM1011 - Chemistry 1A: Atoms, Molecules and Energy LOCATION

�� UNIVERSITY OF PENNSYLVANIA, USA �� UNIVERSITY OF NORTH CAROLINA AT

CHAPEL HILL, USA

�� UNIVERSITY OF EDINBURGH, UK �� UNIVERSITY OF COLORADO, BOULDER, USA

��

RENSSELAER POLYTECHNIC INSTITUTE, USA

�� PURDUE UNIVERSITY, USA

�� PENNSYLVANIA STATE UNIVERSITY, USA

�� EWHA WOMANS UNIVERSITY, Korea

RELEVANT COURSES Chem 100: Introduction to General Chemistry -

CHEM 101: General Descriptive Chemistry I CHEM101L: Quantitative Chemistry Laboratory 1

CHEM08016: Chemistry 1A -

CHEN1211: General Chemistry for Engineers CHEM1221: CHEM 1221 Engineering General Chemistry Lab

CHEM 1100: Chemistry I

-

CHM11100: General Chemistry CHM11500: General Chemistry

-

CHEM 110: Chemical Principles I CHEM111: Experimental Chemistry 1

-

20416: General Chemistry 1 20418: General Chemistry : Laboratory Work I

PHYS1121 - Physics 1A LOCATION

�� WESTERN UNIVERSITY, Canada

RELEVANT COURSES Physics 1301A: Introductory Physics

MATH1131 - Mathematics 1A LOCATION

�� IOWA STATE UNIVERSITY, USA

RELEVANT COURSES -

MATH 160: Survey of Calculus MATH 207: Matrices and linear algebra

Page 37

LEVEL 2 CORE COURSES BIOC2201 - Principles of Molecular Biology (Advanced) LOCATION

󰏅 UNIVERSITY OF SUSSEX, UK 󰎟 UNIVERSITY OF OTTAWA, Canada 󰏚 UNIVERSITY COLLEGE DUBLIN, Ireland 󰐵 NATIONAL UNIVERSITY OF SINGAPORE,

RELEVANT COURSES C7004: Molecular Biology -

BCH3170: Molecular Biology BCH3356: Molecular Biology Laboratory

-

BIOC20050: Principles of Biochemistry BMOL20060: Biomolecular Lab Skills 1 BMOL20090: Molecular Genetics and Biotech

-

LSM3262: Environmental Animal Physiology LSM2191: Lab techniques in life sciences LSM2232: Genes, Genomes and Biomedical Implications

Singapore

-

󰎟 MCGILL UNIVERSITY, Canada 󰏦 KYOTO UNIVERSITY, Japan 󰑔 IOWA STATE UNIVERSITY, USA 󰎟 DALHOUSIE UNIVERSITY, Canada 󰏦 CHUO UNIVERSITY, Japan

BIOL200: Molecular Biology -

BIOL 313: Principles of Genetics BIOL 313L: Principles of Genetics Laboratory

BIOL2030: Genetics and Molecular Biology -

Page 38

intbiochem: Introduction to Biochemistry-E2 basic geneng: Basic Genetic Engineering

236: Molecular Genetics 239: Experimental Course in Molecular Genetics 4749: Foundations of Molecular Biology

COMP2041 - Software Construction: Techniques and Tools LOCATION

󰑔 UNIVERSITY OF PENNSYLVANIA, USA 󰏅 UNIVERSITY OF EDINBURGH, UK

RELEVANT COURSES -

CIS191: Using and Understanding Unix and Linux CIS192: Python Programming

INFR08008: Informatics 2A - Processing Formal and Natural Languages

COMP2521 - Data Structures and Algorithms LOCATION

󰎟 WESTERN UNIVERSITY, Canada 󰎟 UNIVERSITY OF TORONTO, Canada 󰑔 UNIVERSITY OF PENNSYLVANIA, USA 󰑔

UNIVERSITY OF FLORIDA - WARRINGTON COLLEGE OF BUSINESS ADMINISTRATION, USA

󰏅 UNIVERSITY OF EDINBURGH, UK

󰎩 SHANGHAI JIAOTONG UNIVERSITY, China 󰐵 NANYANG TECHNOLOGICAL UNIVERSITY,

RELEVANT COURSES CS 2121B: Data Structures and Algorithms / Problem solving: Programming CSC263H1: Data Structures and Analysis -

CIS121: Programming Languages and Techniques II CIS121: Data Structures and Algorithms

COP3530: Data Structures and Algorithm

INFR08009: Informatics 2B - Algorithms, Data Structures, Learning CS222: Design and Analysis of Algorithms EE2008/IM1001: Data Structures and Algorithm

Singapore

󰏦 CHUO UNIVERSITY, Japan

-

6376: Mathematical Informatics 1 4221: Practical Programming

Page 39

COMP2511 - Object-Oriented Design and Programming LOCATION

󰎟 WESTERN UNIVERSITY, Canada 󰑔 UNIVERSITY OF PENNSYLVANIA, USA 󰏅 UNIVERSITY OF EDINBURGH, UK 󰐵 NATIONAL UNIVERSITY OF SINGAPORE,

RELEVANT COURSES CS 3307A: Object-Oriented Design and Analysis

EAS 203: Engineering Ethics, CIS350: Software Design & Engineering CIS 350: Software Design/Engineering INFR08014: Informatics 1 - Object-Oriented Programming

Singapore

CS2113: Software Engineering & Object-Oriented Programming

NANYANG TECHNOLOGICAL UNIVERSITY, Singapore

CZ2002: OBJECT ORIENTED DESIGN AND PROGRAMMING

󰐵

󰑔 GEORGIA INSTITUTE OF TECHNOLOGY, USA 󰏃 CENTRALESUPELEC, France 󰑔 ARIZONA STATE UNIVERSITY, USA

-

CS 1331: Introduction to Object Oriented Programming CS 2340: Objects and Design

IS1220: Object Oriented Software Design CPI 221: Advanced Object-Oriented Principles Using Java

MATH2801/ MATH2901 - Theory of Statistics LOCATION

󰑔

UNIVERSITY OF NORTH CAROLINA AT CHAPEL HILL, USA

󰑔 UNIVERSITY OF ILLINOIS AT

RELEVANT COURSES -

STOR 435: Introduction to Probability STOR 155: Introduction to Data Models and Inference

STAT 400: Statistics and Probability I

URBANA-CHAMPAIGN - COLLEGE OF ENGINEERING, USA

󰎴 UNIVERSITY OF COPENHAGEN, Denmark 󰎟 UNIVERSITY OF BRITISH COLUMBIA, Canada 󰑔 PENNSYLVANIA STATE UNIVERSITY, USA Many more…

Page 40

NMAK14029U: Statistics for Bioinformatics and eScience (StatBI/E) STAT251: Elementary Statistics MATH415: Introduction to Mathematical Statistics

LEVEL 3 CORE COURSES BINF3010 - Applied Bioinformatics LOCATION

RELEVANT COURSES

KOREAN ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY (KAIST), Korea

BiS438: Bioinformatics CS476: Collective Intelligence in Biomedical Applications

󰏮

COMP3121 - Algorithms and Programming Techniques LOCATION

󰎟 WESTERN UNIVERSITY, Canada 󰎟 UNIVERSITY OF TORONTO, Canada 󰑔 UNIVERSITY OF PENNSYLVANIA, USA 󰑔 UNIVERSITY OF MICHIGAN, USA 󰏅 UNIVERSITY OF EDINBURGH, UK

RELEVANT COURSES CS 3340B: Analysis of Algorithms I CSC373H1: Algorithm Design, Analysis & Complexity CIS 320: Introduction to Algorithms EECS 586: Design and Analysis of Algorithms INFR10052: Algorithms and Data Structures

Many more …

Page 41

ASPARTIC ACID / ASP ASP AS PARAGINE

ISOLEUCINE

ASP AS PARAGINE

PHENYLALANINE

B

I

N Asn

F

AAT

TTT TT T

SERINE

PYRROL PYRRO LYSINE

CYSTEINE

Asx

GAT / AAT

Page 42

Ile

ATT

Phe

S Ser

O Pyl

C

AGT AG T

TAG

TGC

Cys

Page 43

ORIGIN 1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 Page 44

attaaaggtt gttctctaaa cacgcagtat ttctgcaggc cgtccgggtg acacgtccaa agactccgtg cttagtagaa acgttcggat cgaaggcatt cgaaatacca tggccatagt tccttatgaa actcatgcgt ccctgatggc atgcactttg tgaacatgag gacacctttt ttttgtattt gcttgatggc caaccaaatg gacgggcgat aggtgccact atgtcacaat cttgaaaacc ttatgttggt ttgtaaccat aatactccaa gatcgccatt aggtttggat aaaaggaaaa

tataccttcc cgaactttaa aattaataac tgcttacggt tgaccgaaag ctcagtttgc gaggaggtct gttgaaaaag EATcgaactg cagcagaatc gtggcttacc tacggcgccg gattttcaag gagcttaacg taccctcttg tccgaacaac catgaaattg gaaattaaat cccttaaatt tttatgggta tgcctttcaa tttgttaaag acttgtggtt tcagaagtag attcttcgta tgccataaca acaggtgttg unswagaaag bioinforma societyaaa studentaaa

caggtaacaa aatctgtgtg taattactgt ttcgtccgtg gtaagatgga ctgttttaca tatcagaggc gcgttttgcc cacctcatgg gtagtggtga SLEEPgttct atctaaagtc aaaactggaa gaggggcata agtgcattaa tggactttat cttggtacac tggcaaagaa ccataatcaa gaattcgatc ctctcatgaa ccacttgcga acttacccca gacctgagca agggtggtcg agtgtgccta ttggagaagg tcaacatcaa ticsttctgc tcaaacaaat guidetggaa

accaaccaac gctgtcactc cgttgacagg ttgcagccga gagccttgtc ggttcgcgac acgtcaacat tcaacttgaa tcatgttatg gacacttggt tcttcgtaag atttgactta cactaaacat cSEQUENCEa agaccttcta tgacactaag ggaacgttct atttgacacc gactattcaa tgtctatcca gtgtgatcat attttgtggc aaatgctgtt tagtcttgcc cactattgcc ttgggttcca ttccgaaggt tattgttggt ttccacaagt tgttgaatcc tattggtgaa

tttcgatctc ggctgcatgc acacgagtaa tcatcagcac cctggtttca gtgctcgtac cttaaagatg cagccctatg gttgagctgg gtccttgtcc aacggtaata ggcgacgagc agcagtggtg gtcgataaca gcacgtgctg aggaREPEAT gaaaagagct ttcaatgggg ccaagggttg gttgcgtcac tgtggtgaaa actgagaatt gttaaaattt gaataccata tttggaggct cgtgctagcg cttaatgaca gactttaaac gcttttgtgg tgtggtaatt cagaaatcaa

ttgtagatct ttagtgcact ctcgtctatc atctaggttt acgagaaaac gtggctttgg gcacttgtgg tgttcatcaa tagcagaact ctcatgtggg aaggagctgg ttggcactga ttacccgtga acttctgtgg gtaaagcttc actgctgccg atgaattgca aatgtccaaa aaaacgtcag caaatgaatg cttcatggca tgactaaaga attgtccagc atgaatctgg gtgtgttctc ctaacatagg accttcttga ttaatgaaga aaactgtgaa ttaaagttac tactgagtcc Page 45

Careers Whilst course work prepares you academically for the Bioinformaticseld,thebestwaytogainhands-onexperienceis through undertaking internships and research projects. Breakingoutintoindustrycanbeadifcultprocess,andrequires you to develop an array of professional skills. With Bioinformatics covering a wide range of disciplines, there are a number of different roles that you can enter as a Bioinformatician, some of which include: > Bioinformatics Specialist A bioinformatics specialist collects, manages and analyzes biological and biochemical data by using computer software.

They mainly focus on analyzing DNA and molecular data. They also develop complex mathematical algorithms to analyze and categorize the data gathered. > Bioinformatics Programmer A bioinformatics programmer creates living materials algorithms. They are responsible for administering sequencing and other computational algorithms to produce accurate interpretations of biological data. Creating tools to track these sequences is another duty of a bioinformatics programmer.

Page 46

Coordinating with other programmers, designing scripts for extensive data, training junior analysts and noting technical issues are also basic responsibilities. > Bioinformatics Analyst Bioinformatics analysts evaluate the information gathered from large databases to develop cures for diseases. Bioinformatics analysts are experts in computer databases, software and algorithms. Collaborating closely with researchers, bioinformatics analysts are the ones who start researching genomic data. Designing algorithms and developing databases are more duties of this role. > Researcher Researchers are responsible for collecting, organizing, and analyzing opinions and data to solve problems, explore issues, and predict trends. They may specialize in different areas such as sociology, medicine, psychology, science, among other elds. > Biologist (Wet Lab) Biologists study organisms and plant life to learn more about their composition, behaviors, habitats, and how they interact with other organisms and their environment. They conduct research, collect samples and measurements, perform testsandexperiments,andinterpretandreporttheirndings.

Page 47

> Computational biologist (Dry Lab) A computational biologist, also called a bioinformatics scientist, has both biological knowledge and a computer science background, and uses these to analyze and model data. The eldincludesmanytypesofbiologicalstudy,fromdrug - devel opment to genetics and has expanded along with the biotech and pharmaceutical industries in the past few years. Computational biologists usually work for research institutions or doing research for private companies. > Software Engineer/Computer Scientist Software engineering is an offshoot of computer science and is involved in the design, development and production of computer software. Software engineers work with their clients or employers to create customised systems. They can develvop everything from operating systems and middleware to network control systems. Their work depends on the business’s needs and the desired end results.

In addition to the above roles, your Bioinformatics degree empowers you to enter any industry that you choose. Poweredbyyourtechnicalprociencyandcomputationalskills,as well as your analytical line of thinking, you can also apply for non-bioinformatics jobs, such as a Data Analyst, Data Engineer, Consultant, or Engineer (if you are enrolled in the Engineering stream).

Page 48

Page 49

Page 50

> Companies to look out for Depending on your career aspirations and professional interests, there are a plethora of companies that you can investigate as your next prospective workplace. Below are some organizations that previous Bioinformatics students have worked at, as an intern or graduate.

Research Sector • • • • • •

The Victor Chang Cardiac Research Institute The Garvan Institute of Medical Research Children’s Cancer Institute Kirby Institute Ramaciotti Centre for Genomics (UNSW) CSIRO Biotechnology

• • • •

ResMed Cochlear Medtronic GE Healthcare Pharmaceutical Sector

• • • • •

Novartis GSK Roche AstraZeneca Pfizer Software Development & Data Analytics Sector

• Atlassian • Google • Quantium

Page 51

Student Testimonies HearfromnalyearstudentsChiaraandAllynefortheinsights on how to start your career in Bioinformatics, and maximise your time at university, drawing on their own experiences.

“

The aspect of the bioinformatics field that most excites me is how biology, computer science, and statistics all combine to help others.

I’m really passionate about making a difference through my work and bioinformatics helps you to do that in such a unique and engaging way.

I think my best advice is to always apply to jobs and internships, even if you feel underqualified or are unsure of your current skill level. It’s also really important to make the most of the opportunities you get to work with Bioinformaticians in the industry during coursework; if you’re able to impress them, this can lead to more doors opening in the future also!

One of the best experiences was the KCCG Summer Scholarship that I was recommended to apply to by my supervisors from an industry project completed during the bioinformatics course BINF6111. This was such a great opportunity to put the skills learned during this degree to actual use and really helped me to experience what it would be like to work in an actual bioinformatics role.

”

Alyne Gollon

BioinformaticsResearchOfcerattheGarvanInstitute

Page 52

“

Most likely you will work in research as a bioinformatician. This means you won’t only be coding and analyzing, you also have to work in a team, write up reports, literature reviews, and manuscripts and there may be pressure for funding at times.

Make sure to find experiences in bioinformatics roles wherever you can. Even in your first year, you can start looking and applying to companies and institutes for internships.

Also, try to get involved in as many extracurricular things as possible. This may be volunteering for a society or participating in a development program. Try to accumulate as many different experiences as possible and you will never struggle in a job interview.

For the first 4 years of my degree, I was always volunteering for something or signed up to development workshops. I liked to keep busy and have some fun extracurricular things to do outside of studying and working all the time. I’ve also had a casual position with a genetics research company since 2019 and completed a 2020-21 summer internship at the Garvan Institute. These experiences have been great to understand what a bioinformatics role really looks like and gain skills I wouldn’t have attained in my uni studies.

Lastly, be prepared to not know what you’re doing and feel out of your depth in any role pre or post-graduation. Just try to ask lots of questions, aim to always learn more, and give yourself some slack, and you’ll be amazing.

”

Chiara Aquilina Reid

Bioinformatics Engineering Student

Page 53

Tips on the Job Application Process Resumes and cover letters are the most essential thing to masterbeforeyoustartapplying.Thisistherstimpression that you will make on your prospective employer. As a starter for engineering students, the Industrial Training Moodle page covers the basic ground on how to write these. Make sure you complete each module available, to develop a rich understanding on how to optimise your resume and cover letter.

Overall, keep your resume and cover letter short and concise. Resumes should not exceed past 2 pages. Showcase the relevant courses that you have completed and any projects/ big assignments that encompass your skills on your resume. If you choose to include references, ensure that you choose two strong references. UNSW Bioinformatics Lecturer and academic, Bruno Gaeta is always willing to be one, so feel free to email him!

When listing your previous work, project or leadership experiences on your resume, you should try and follow the Three Dot Point rule.

Thersttwodotpointsshoulddescribethetasksthatyou completed during the experience, highlighting particular skills that you developed or demonstrated. To highlight your abilities, use high modality words that emphasise the impact that you made in your role, such as “Led, Achieved, Designed, Developed, Collaborated” etc.

Page 54

The third dot point should outline any success metrics orKPIsthatyouweregiveninyourrole,oranysignicant achievements that you made. This can vary depending on your responsibilities and the time frame you were there. Two different examples of what this could look like include: • Collaborated in a team of 4 to present our work to the company managers, and achieved excellency across all professional attributes listed by Engineer’s Australia in my supervisor’s evaluation; or • Achieved First place in the Three-minute Thesis pitching competition, delivered a seminar demonstrating the application’s functionality to the [Organisation’s] managerial team,andincreasedtheefciencyoftheproductby75%.

Also, ensure that the formatting of your resume is consistent and clear to read. List your experiences and achievements in chronological order, from the most recent to the least. In the description of any item that you include on your resume, ensure that you utilise the words or key skills that the job applicationidentiesasimportantfortherole.

Page 55

[Your Name] Undergraduate at University of New South Wales [E-mail | LinkedIn | Mobile]

CAREER PROFILE I am in [third] year studying the degree Bachelor of Engineering, majoring in Bioinformatics with honours. I am determined to build my career prospects and willing to receive first-hand experience at [company] and its culture. [A sentence summarising your focus at uni and main skills you encompass].

EDUCATION Bachelor of Engineering (Honours) | 2019 - Present | UNSW ● WAM – XX.X ● Some relevant courses – Data structures and algorithms (C language), Software Engineering Fundamentals (Python), Object-oriented design (Java)…

RESUME TEMPLATE takes one or two pages. If one page, maybe put a whole page image on one of the pages.

[Education level] | [Year] | [School name] ●

ATAR XX.X

EMPLOYMENT KCCG Genomics Summer Scholarship, Garvan Institute of Medical Research 2020-now Overview of what it included and your main involvement: • Specifics of tasks you completed

[Your position] |[Company/employer]

2019-2020

[Your position]|[Company/employer]

2018-2019

Page 56

PROJECTS (or any other unpaid experience that you have completed that showcase your skills) Phylogenomics workflow for short-read sequencing data | 2019 | UNSW [sample] ● ● ●

Project with Dr [name] bioinformatics lab focusing on evolutionary genomics.

Creating a Snakemake workflow (using Python scripts) that takes a set of short-read Illumina sequencing data and output supertrees.

Using tree generating tools like IQ-TREE and ASTRAL and de novo genome assembly using ABySS.

RESUME TEMPLATE takes one or two pages. If one page, maybe put a Slackr | April 2019 | UNSW [You can include assignments that are relevant to the role whole page image on one of the you are applying for] pages. ● Collaborated in a team of 3, performing consistent stand ups and utilised agile techniques to write the backend code of an application with the same functionality as Slack in python3 AWARDS AND ACHIEVEMENTS Dean’s Honours List – School of Computer Science and Engineering 2020 [Description of the award] Pitching Competition - 1st Place 2019 [Description of the award] KNOWLEDGE & SKILLS ● Experience in modern bioinformatics tools – alignment programs like CLUSTALW, protein structure prediction methods, BLAST programs etc. ● Computational background in programming languages C, Java, Python

Page 57

Template for Cover Letter Whilst your resume outlines your professional experience and achievements, your cover letter is the perfect opportunity to demonstrate your personality, passions and values. Showcase that your mission aligns with the organisation that you are applying for, the reasons that are motivating you to apply for the advertised position, and why you are the best candidate. Cover letters should not exceed 1 page, and must be specictoeachcompanyandrolethatyouapplyfor.

Page 58

[YOUR NAME] UNSW Sydney [Phone] [E-mail]

To [Company/employer], Re: [position you are applying for]

COVER LETTER TEMPLATE takes one page

I write in response to show interest [position you are applying for]. As a competent candidate, I would bring a hardworking attitude and willingness to experience the culture at [company].

Currently, I am a [third] year Computer Science and Engineering student, majoring in Bioinformatics, at UNSW. I seek this professional experience as it aligns with my previous experiences and widens my future career prospects. Majority of my university work has been focused on…. I also have first-hand experience on bioinformatics projects such as….

Previously on my internship/project at…, I was challenged to have an open-mind and…. Following my proactive involvement….

I am willing to explore my options and potentially start my professional career with [company].

Thank you for considering my application.

Yours Sincerely, [Your name]

Page 59

INDUSTRIAL TRAINING To graduate from an accredited engineering program at UNSW, you must complete 60 days of approved industrial training (WIL as a program requirement). Although Industrial Training (IT) is only a requirement in the Engineering stream, it is highly recommended for students majoring in Bioinformatics in the Science stream to also undertake an industry placement.

Doing internships and projects in real-world companies is the only way that you will learn what an actual bioinformatician does!

Industrial training must be approved prior to starting the placement and occur during enrolment of your program of study. This is to ensure that the work undertaken is supervised, relevant to your program of study and approved for credit towards industrial training requirements.

Page 60

t

> Checklist for Industrial Training In Moodle, enrol in the UNSW Engineering Industrial Training Moodle course under ‘Self-enrolment (Student)’ and use enrolment key: Eng5tudent • Completed 5 pre-requisite modules 1.

2.

3.

4.

5.

Writing a Successful Resume and Cover Letter Interview Skills Career Planning and Networking Skills Workplace Behaviours Industrial Training and Your Health and Safety

• Choose your School group in Moodle so you can submit an approval application for a placement.

• If you have been offered a placement, then you must apply for approval before you commence this placement • After applying for approval for your placement, check if you ave provided all the required supporting documents • Make sure you receive the approval prior to commencing your placement.

• Complete the Employer Evaluation Form with your supervisor after you started your placement • You also need to log your 60days of placement in the UNSW Engineering Moodle page • Once you completed your 60 days log, you’ll be enrolled into the course ENGG4999 to submit your final written report.

• As soon as you receive a mark of “Satisfactory” on your report, you’ve completed your Industrial Training.

Page 61

When is the best time to complete your industrial training?

> Single degrees – Bachelor of Engineering in Bioinformatics, Bachelor of Advanced Science If you’re doing the common 4-year Engineering or Science degree in Bioinformatics, the best time to do industrial training would be at the end of Second or Third year. This is because afteryourrstyear,youwouldnothavecompletedmanyofthe computingorbioinformaticscoursestohavesufcientexposure in the eld, especially if you are looking at a Bioinformatics/ Research focused company. Additionally, the bioinformatics courses in the degree only start from Second year onwards.

The summer period guarantees you the largest chunk of holidays from university and lots of companies will have student intern positions open for the summer. So heaps of opportunities willoatyourwayifyouareonthelookout!

You are also allowed to split the 60-day IT period into 2 or 3 parts, and it can be completed at different workplaces. If you plan to complete some courses over summer, then doing a shortperiodofITcanbebenecialforyou,ifyoudonotwantto overload over holidays.

Page 62

> Double degrees – Bachelor of Engineering / Master of Biomedical Engineering, Bachelor of Advanced Science / Bachelor of Engineering If you are doing one of the degrees listed above, you have 5 6 years of university. Doing a double degree means that you have more opportunities of interning at several companies.

You also get the freedom to do multiple internships and extend more than the 60-day period. It is recommended to get into the industry as soon as you can. Potentially, it is possible to do one at the end of every year, from Second through to to Fourth year.

This will give you the widest exposure and put you in a very good position if you are interested in completing your Honours project with a company in industry.

Even though you have more time to complete IT, you should ideally have something completed by the end of Third year, even if it covers only part of the 60-day period. It may be smart to leave the summer of your Penultimate year for any last-minute courses that you have missed or need to catch-up on, to avoid extending your graduation any further.

Page 63

Tips on courses to complete before industrial training As mentioned, it is optimal to undergo IT after at least completing your Second year. In this way, you will have some relevant courses completed. As a Bioinformatics student, the programming skills that you possess are key for the industry.

Most of the positions will require knowledge in at least one programming language. Because of this, it is recommended that you have completed the introduction to programming courses in First year if you don’t have prior experience in coding. You should also have some knowledge on the different elds there are in bioinformatics.

Page 64

Some courses that would be useful to complete before your IT: • • • • •

COMP11Introduction 5 toProgramming:Clanguage COMP1Software 531 Engineeringfundamentals:Python COMP2521 Data structures and Algorithms: C (more advanced) BINF2010 Introduction to Bioinformatics COMP2041 Software Construction (mainly scripting languages like Shell and Perl which would be useful because many modern bioinformatics tools are commandline pipelines.)

Page 65

Traditional IT Opportunities Therearemanydifferentwaystondindustrialtraining,both traditional and non-traditional. By joining the Moodle page for Industrial Training (IT for Engineering), you have access to the IT forum, where organiser Michele Hannon constantly posts opportunities available for students. Additionally, the UNSW Employability site outlines various opportunities for internships, andgreattipsandworkshopsforndingIT. Outside of these resources, the best method is to conduct your own independent research into bioinformatics opportunities for students. By nding companies or bioinformatics projects yourself,youalsoareabletondsmallerbusinessesthatmay offer internships that are less competitive and less known. For a list of companies that you can look into that offer internships or graduateroles,seePage51.

If you have found a company or researcher that you are interested in, the best method is to personally reach out and ask if there is an opportunity for an internship or to work with them. There are three main avenues for expressing interest.

Therstmethodisreachingoutpersonallyforanopportunity.

This is easiest if you have found a researcher or know a person in the company. In this case, reach out via email expressing interest, including both your resume and cover letter in the email (seetheaboveCareerssectiononPage54forasamplecover letter and resume). Ensure this email is written professionally and clearly expresses your motivations and the goals that you want to achieve through working with the organisation.

Page 66

The second method is to apply through an application portal.

This is in the case that the internship has been advertised publicly and is taking formal applications. These applications will traditionally comprise of your resume, cover letter, and answers to a selection of questions. When answering the questions, ensure that you have researched the company and are targeting each answer to show your knowledge of the company and to portray what you want from the experience.

The nal method is through cold calling. If you have found a company you are interested in working for, the nal way to reach out is by making contact directly. This can be done through calling up the company and asking about internship opportunities for students, or through connecting on a platform such as LinkedIn. LinkedIn is an invaluable tool that you can use to message and connect with professionals that are in a role or project that you would like to be involved with. By sending a personalised LinkedIn connection request, you can ignite discussion and gain advice from your connections and recruiters.Youcanleverageyournetworktoalsondthemost relevant contact or email address, that can help secure you a position in your dream organisation.

Page 67

Page 68

Non-TraditionalIT Opportunities Anon-traditionalplacementcanbeastudent projectatUNSW,aprogramorcoursewhereyouare exposedtoengineeringrelatedtasksandtechnical skills.ExamplesincludeChallENGprojects,UNSW WILCourses,TasteofResearchandProjectEverest.

Thebestwaytondnon-traditionalopportunitiesis throughtheCareers&EmploymentResourcessection on the UNSWEngineeringMoodlepage.

Ifyouarecompletingaplacementthat-isconsid eredNon-Traditionalandisnotonthelist,youcan stillapplyforNon-Traditionalpre-approval.TheWIL IndustrialTrainingofceandyourSchoolIndustrial TrainingAcademicCoordinatorwilldetermineifthe placementissuitable.

Page 69

ChallENG The university runs a program called ChallENG which connects students with academics and industries in order to collaborate on mid-to-large real-world projects. There are four branches (pillars) of the ChallENG program. Some pillars offer projects that can count towards course credit in the Bioinformatics Engineering degree, if taken as a discipline elective.

One of the pillars is the Vertically Integrated Projects (VIP) program. The VIP program is open to all undergraduate students, meaning that you might be working with students from other engineering disciplines as well as other faculties. This is a great way to learn and gain experience working in a multidisciplinary team.

Page 70

VIP is worth a total of 6 units of credit, spread across one year. Enrolling in one of the VIP projects on offer requires an online application expressing your interest and any skills you may be able to offer. You may then be contacted by the academic in charge for an interview and accepted before you can formally enrol into one of the courses ENGG2600, ENGG3600, or ENGG4600, depending on your level.

New projects may be added each year, however, projects from previous years will often continue across the next year, allowing new students to enrol and current students to continue in the team for another year if they would like to.

As bioinformatics students, you can submit an application for any project that interests you. If you are unsure which projectsarespecicallysuitableforabioinformaticsstudent look at points under the ‘Desired Skills’ and ‘Research, Design, and Technical Areas’ sections for each project. A background in computing and software engineering is valuable in a number of projects. From those currently listed at the time of writing, InsightMed, 4D Immersive Surgery, Connected Health, and Data Dynamics are good places to start.

Project details and program information can be found at Vertically Integrated Projects | The ChallENG Program - UNSW Sydney.

Page 71

Acknowledgements This guide is brought to you by the following writers, editors and designers: Gabrielle Younes - Erica Jin - Jason Soo - Milly Joyce - Shaun Zheng - Smruti Mandadi - Cameron McMenamie Ayra Islam - Jasmin Yip - Anthony Nguyen - Kavitha Krishna - Vandana Prathapar Aravind Venkateswaran -

Page 72

President Vice President Secretary Treasurer HR Executive Events Executive Digital Branding Executive HR Subcommittee HR Subcommittee Digital Branding Subcommittee Events Subcommittee Events Subcommittee Events Subcommittee